LOCUS QJU59180.1 849 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 GAF domain-containing protein protein. ACCESSION CP053346-3295 PROTEIN_ID QJU59180.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_16685" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007704400.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MADFDKVDLT NCDREPIHLL GAIQPAGYLI AVTRDWLIAR VSKNIRNLLG FDPEDLIGSP 61 LADYVPAKLL HDLRNRLSYL SEPDMVERLF GRQIGTSGQP YDVAIHYSGG QIVIEAEAGA 121 PGDEGSISVR AMMSRLDRAK DLPSFYREGA RQVRSLLGYD RVMVYKFAAS GDGEVVAEAC 181 KTGIGSFMGL HYPASDIPRQ ARALYKRNLV RVIRDVASEP IAIVPQIDAA GHQLDLSLSI 241 LRSVSPIHIE YLKNMGVAAS LSISIIVDGE LWGLFACHNY SPRSPTFERR SVCEQFAEMF 301 SMRLESRERR QIVDYERRAR DISDQLLGAV ASDETLLNDP DWLGDILTGA IPATGVGVWI 361 NGNYAFSGVT PPTEDFRRIV RALNGLAAGR VFTTDHIGGL IEDAGRFADK AAGMLAIPIS 421 RSPRDYVILF RAEIKQSVRW AGDPHKTLEY GPNGPRLTPR ESFAEWQENV TGRAEPFTMS 481 EIRVAETLRA TLIEVVLRLA DEAAAERRQS TARQEMLIAE LNHRVRNILG VIRGLIRQSQ 541 PDSPEVKDFV RLVDGRIHAL ARAHNQITDD HWGPAPLQAL IDAEAAAFAA SRESAIISRG 601 DPVLLNPQAY SSMALVIHEL VTNSTKYGSL SGDGEVHIDW SRASNGDLII TWQEVGGPPV 661 TPPKRKGFGT TIVNRSVPYD LGGKAKIDYA VDGVRAEFCI PSRHVSEPKT FTGPEIRMSR 721 PGVSSQQVID PSHFGRKSVL LVEDSLIIAL DAEDILERFG ASVITASTPE AAHAILDQQR 781 VDYAILDINL GDQTSFGVAD RLKELGTPYF FASGYGEQAN LPMDHRSTSV VQKPYTTHNL 841 ARGIDEMFP //