LOCUS       QJU59180.1               849 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 GAF domain-containing protein protein.
ACCESSION   CP053346-3295
PROTEIN_ID  QJU59180.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_16685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007704400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MADFDKVDLT NCDREPIHLL GAIQPAGYLI AVTRDWLIAR VSKNIRNLLG FDPEDLIGSP
       61 LADYVPAKLL HDLRNRLSYL SEPDMVERLF GRQIGTSGQP YDVAIHYSGG QIVIEAEAGA
      121 PGDEGSISVR AMMSRLDRAK DLPSFYREGA RQVRSLLGYD RVMVYKFAAS GDGEVVAEAC
      181 KTGIGSFMGL HYPASDIPRQ ARALYKRNLV RVIRDVASEP IAIVPQIDAA GHQLDLSLSI
      241 LRSVSPIHIE YLKNMGVAAS LSISIIVDGE LWGLFACHNY SPRSPTFERR SVCEQFAEMF
      301 SMRLESRERR QIVDYERRAR DISDQLLGAV ASDETLLNDP DWLGDILTGA IPATGVGVWI
      361 NGNYAFSGVT PPTEDFRRIV RALNGLAAGR VFTTDHIGGL IEDAGRFADK AAGMLAIPIS
      421 RSPRDYVILF RAEIKQSVRW AGDPHKTLEY GPNGPRLTPR ESFAEWQENV TGRAEPFTMS
      481 EIRVAETLRA TLIEVVLRLA DEAAAERRQS TARQEMLIAE LNHRVRNILG VIRGLIRQSQ
      541 PDSPEVKDFV RLVDGRIHAL ARAHNQITDD HWGPAPLQAL IDAEAAAFAA SRESAIISRG
      601 DPVLLNPQAY SSMALVIHEL VTNSTKYGSL SGDGEVHIDW SRASNGDLII TWQEVGGPPV
      661 TPPKRKGFGT TIVNRSVPYD LGGKAKIDYA VDGVRAEFCI PSRHVSEPKT FTGPEIRMSR
      721 PGVSSQQVID PSHFGRKSVL LVEDSLIIAL DAEDILERFG ASVITASTPE AAHAILDQQR
      781 VDYAILDINL GDQTSFGVAD RLKELGTPYF FASGYGEQAN LPMDHRSTSV VQKPYTTHNL
      841 ARGIDEMFP
//