LOCUS QJU59032.1 570 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 30S ribosomal protein S1 protein. ACCESSION CP053346-3120 PROTEIN_ID QJU59032.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /gene="rpsA" /locus_tag="HL653_15805" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012048671.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MATAAFPTRD DFAALLNDVL GGESTGFEGR VVKGTVTAIE NDVAVIDVGL KSEGRVPLRE 61 FAPAPGVKAE LKVGDEVEVY VDRVENSHGE AMLSRDRARR EAAWDKLEGE FAAGNRVDGV 121 IFGRVKGGFT VDLNGAVAFL PGSQVDIRPV RDVTPLMDIP QPFQVLKMDR RRGNIVVSRR 181 AVLEETRAEQ RTGLIQSLAE GQVVDGVVKN ITDYGAFVDL GGIDGLLHVT DISYKRVNHP 241 SEVINIGDTV RVQIVRINRD TQRISLGMKQ LESDPWEGAG AKYPVGAKFS GRVTNITEYG 301 AFVELESGIE GLVHVSEMSW TKKNVHPGKI VSTSQEVEVV ILEVDEDKRR ISLGLKQAQS 361 NPWDSFSERH PIGSTVEGEV KNATEFGLFI GLDGDIDGMV HMSDIAWGVT GEEALAMHHK 421 GETIQAQVLD IDPEKERISL GIKQLERGGV STGASAGGSG VNKNQVVTVT VLAVNDGGLD 481 VQVGDDGAHG FIKRSDLGRD RDEQRPERYQ PGQKFDAMVT GFDRSKKPTF SVKAMQLAEE 541 KQAVQQYGSS DSGASLGDIL GAALKARDEA //