LOCUS QJU58898.1 699 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 DEAD/DEAH box helicase protein. ACCESSION CP053346-2958 PROTEIN_ID QJU58898.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_14970" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017273616.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MNFQIADTFT AALTRLTGQE QKQVKTAAFD LQLSPERPGL QMHRLDNGRD PNFWSARVNQ 61 DIRIIIHKTE ASFMLAYVDH HDKAYAWAER RRIEAHPRTN AIQIVEVHER IEEAQPQFPL 121 IAERAPEPVA AQPPAPALFA ALTADELLDI GTPEDWVEDV RSWTEDRFFT MSDRLPAEVA 181 EALLDYAATG IVPQAVWMQK ANAPFAHPDT LRRVITIATS EDLQAALDFP WDKWSVFLHP 241 SQRDIVDRDF AGPARVTGSA GTGKTIVALH RAARVVREDA HARVLLTTFS RPLANALRAK 301 LAILLTGDHG MIDRVSVASF EDAAGDLYQL ATGRRPVVAA PDVQQAALDR AIAAQRYAEL 361 PARFVWAEWR QVVDGWGIAY LDAYASVPRV GRRNRLGAKQ REVLWPVFMA ARQTLKARGM 421 VTLCQLYADV AAHYATRGDK LYTHVIVDEA QDLGVNELRM MAALAGGPGA LFFAGDLGQR 481 IFQHPFSWKS LGVDVRGRSS SLRINYRTSR QIREAADKLL PPKVTDVDGI EDSRADAQSV 541 FEGPPPEIAE CENDAAEADA VAAFLRAASD AEIAPFEMGV FVRSDEQLAR ARAAIGLTGL 601 ACRQLSDRVE DNPECVALGT MHFAKGLEFK AVAVMACDDE ALPLQTRIDE ATDEDELREV 661 FDTERHLFYV ACTRARDRLH VSGVKPASEF LDDLLDAGK //