LOCUS QJU58347.1 951 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 TonB-dependent receptor protein. ACCESSION CP053346-2303 PROTEIN_ID QJU58347.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_11660" /inference="COORDINATES: protein motif:HMM:NF012801.1,HMM:NF019335.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSVNTNARAS RLSAAKQSLH AGVALSMGLL AAPLHSQTAD GAAGSDLQTE NVRLRRELDE 61 LRRQLASAQG AHPAAAHPPV AAPENLNNAA ADAPAPATGV ANADEDEVKV VGRIVGAALR 121 DLKDNPKPVS VVTQAELKIF DQVTLPDVLS RLGNVRFNDG NPRTGSFSMR GLTAGAGTDT 181 IDPSIGLTVD GVPYAYLAMA VGTDLVDIEQ VNVTRGPQGT TGARHTSVGQ INVTTRRPSF 241 TPDASASLTL GSNNALRAEV EGGGPIIDGK LAFRITATRD QRDGDYWNKY PDLRGLQSHG 301 NIDRTYGRVQ LLFTPTEDFR VRVLYDHQPN GDEYVNGLAF NKPTPDFYAN GAPVDKTNDV 361 IAKLSRRWFT QQSAYTANDY YKYPVYLDSN RAITTGGKGG LVDASWDIGD QTLSVLSSAR 421 KHYFLAANDD GTPFDISRNG GFISTYWQFT NEAKLTGELG DGLVNYTAGL FYLKAHTNSL 481 NRSRQGNDSG AYNANVAEYA ALDANSSGRE LLTNSLARVY RGDQSYVRSE SKSAFAQADW 541 HLTHTLTLTT GGRISREARR LSESISILDN GYGSSLNPVN VGAVQLGGFN STAFTAANAG 601 TLVAGQSAAQ LSLADAVAQQ YFNVAATGTP GGAYNSLTAA QRRQVAAAKA IRLRTFSTLF 661 SETAAKPWIG NIYTGQLSVR NDFSQNLTSY ATVQYGEKPG IAQFNGLVPG TSGAPRNLPA 721 KKERTISYEV GVRTNWLGGD LVLNANVFRS YIKDFQQTVY FLDDLLTALN NDGTLYYSSG 781 VGNVGKVRTQ GLETDLVYSG LRYTTFRFSG AYTDAKYLDF AFSGQPSENA NLTQRFRDVS 841 GFTLPNAPKL QFNVTGDYRR PIFENYLFHT SAGYTYTSRE NGDTALSAYG FRKPYGIADA 901 SIGFGRRDGL FDVNLVVRNL FDEDRGDPGW NTYTVYQRRR WIGAVVSSKF R //