LOCUS       QJU58305.1               904 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 family 78 glycoside hydrolase
            catalytic domain protein.
ACCESSION   CP053346-2249
PROTEIN_ID  QJU58305.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_11390"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017410.1,HMM:NF036578.1,HMM:NF036579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKGIYRMRHA PFCFALAFTG LAFSSVAQTG SDGDTIRPIQ PSATAMPLNQ LLDDPRAKEI
       61 VGRHAPKVLG TGGPQARSMT LADIRAFAPD NLPADAFDRI TGELAALPPT PAAIAAARAA
      121 TDAAAQARLD PAAPWITHPA AFSADFRQAP VALQFRRTIS LTMKPSTMPI RVSADNRFIL
      181 YVNGVRVAAG PARGDLAHWR YEIVDIAPYL RPGANTIAAQ VWSDGKVAPV AQISTGHTGF
      241 MLKAERPEDS TIDTGPDWSV RVDASRQSSS GMRQLIGEVG PTYYAAGAPE QLVAGFQLDG
      301 WATGADRAQD WRSPVAAITE GARRRTLVPD VLPQMRYATV ASGRVVRASG ISAGAFPRGA
      361 VIVPAHSEAK LLIDAGRVLA AYPALIASGG RGATITLTYA EALYDPVKRG DRGGPVRFPD
      421 RAKVDDGLAL GLTDTLIADG RPDRVFAPFW WRAWRYVEVR VKTGDQPLTL DRFETRETGY
      481 PFEQRGHFTS SDPQLNEIWR IGWLTGLFDA HETYQDSAYW EQLQYVGDTR IQALLSYDVG
      541 RDPKLAVQAL DAFDGSRVVD GLPQSSWPIS GSNPIPPFAL LWIGMLHDYW LRQPDTAVLK
      601 RTLPGMRAVL DWYAPYVRDD GIVRASPGWL FVDWRDGQDG GRDRTGKAPD NCVISLLRLG
      661 ALKEAADIEN AVGDPARARS DAEQAGIAAR GIQAQCWDAG RRLYADTPSK TGFSQHANTL
      721 AVLYDVAPKA EQKALLERVI VPGHGIDAPA GIMGTTFYFS FYLARALDHA GLSDRYLGLL
      781 DSWRDLLKQH FTTWPENPDP SRSDSHAWSA HPTSGLLTYV AGIQPAASGF SKVRISPHLG
      841 ELRTLDAAMA HPAGLISTRY RQVGNGLEVE IDLPRGLTGT FVHAGREWPL KPGSNRIRSP
      901 AGKP
//