LOCUS QJU58305.1 904 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 family 78 glycoside hydrolase catalytic domain protein. ACCESSION CP053346-2249 PROTEIN_ID QJU58305.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_11390" /inference="COORDINATES: protein motif:HMM:NF017410.1,HMM:NF036578.1,HMM:NF036579.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKGIYRMRHA PFCFALAFTG LAFSSVAQTG SDGDTIRPIQ PSATAMPLNQ LLDDPRAKEI 61 VGRHAPKVLG TGGPQARSMT LADIRAFAPD NLPADAFDRI TGELAALPPT PAAIAAARAA 121 TDAAAQARLD PAAPWITHPA AFSADFRQAP VALQFRRTIS LTMKPSTMPI RVSADNRFIL 181 YVNGVRVAAG PARGDLAHWR YEIVDIAPYL RPGANTIAAQ VWSDGKVAPV AQISTGHTGF 241 MLKAERPEDS TIDTGPDWSV RVDASRQSSS GMRQLIGEVG PTYYAAGAPE QLVAGFQLDG 301 WATGADRAQD WRSPVAAITE GARRRTLVPD VLPQMRYATV ASGRVVRASG ISAGAFPRGA 361 VIVPAHSEAK LLIDAGRVLA AYPALIASGG RGATITLTYA EALYDPVKRG DRGGPVRFPD 421 RAKVDDGLAL GLTDTLIADG RPDRVFAPFW WRAWRYVEVR VKTGDQPLTL DRFETRETGY 481 PFEQRGHFTS SDPQLNEIWR IGWLTGLFDA HETYQDSAYW EQLQYVGDTR IQALLSYDVG 541 RDPKLAVQAL DAFDGSRVVD GLPQSSWPIS GSNPIPPFAL LWIGMLHDYW LRQPDTAVLK 601 RTLPGMRAVL DWYAPYVRDD GIVRASPGWL FVDWRDGQDG GRDRTGKAPD NCVISLLRLG 661 ALKEAADIEN AVGDPARARS DAEQAGIAAR GIQAQCWDAG RRLYADTPSK TGFSQHANTL 721 AVLYDVAPKA EQKALLERVI VPGHGIDAPA GIMGTTFYFS FYLARALDHA GLSDRYLGLL 781 DSWRDLLKQH FTTWPENPDP SRSDSHAWSA HPTSGLLTYV AGIQPAASGF SKVRISPHLG 841 ELRTLDAAMA HPAGLISTRY RQVGNGLEVE IDLPRGLTGT FVHAGREWPL KPGSNRIRSP 901 AGKP //