LOCUS QJU57994.1 563 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 VWA domain-containing protein protein. ACCESSION CP053346-1865 PROTEIN_ID QJU57994.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_09470" /inference="COORDINATES: protein motif:HMM:NF012321.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSFAAPWFLL LALLPLALSF LMARREGTGE ALPAVLRAVA AGGRLRIGGR GIGRPWRFWC 61 ALLLLVVALA RPQYGAKPDA ADTRPQVMIA LDLSRSMTAT DALPSRLERA RTIATRFVAQ 121 SPGADIGLIA FAGQAYPLAA PSADRALLRF FLPSLMPDQM VVPGSNFASL LDVAQHSFGA 181 KAVSRTLVIL SDGEAEPTPW RPILPKLRAA GVHVVAVGLG TTAGAHIRSG GRDLIGPSGT 241 AVVSRLDTDA MRAIANGTGG AYLDAAKSRD LSARVQALAD ADAAAAATAA PKPGEAKQDR 301 FGWVLVPGLL LLLWSALVEW PALPRLLRAP RHWQRPAAYA SLAVLAVGLA GPRGQAVKPP 361 PISLELHGTE PDPLLVVKDR TRKVLAEGQA TAEDYMALAQ AAVRYGEVHR QHAHVLQDGV 421 MRDGLVAIDA GEAIDPRMAG WADARAKLIH LLRPPKPVNN PDKGAPDPAN DPVDAKLNMP 481 QPVPGEDQDK KDGKDSGKKA DQDSRKVGGT QRSKAEEAEW RVPSLVKPLY ALQKLRGSDR 541 PGELFRLMQI QQPGPPRKGG QTW //