LOCUS QJU57980.1 670 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 PAS domain-containing protein protein. ACCESSION CP053346-1849 PROTEIN_ID QJU57980.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_09385" /inference="COORDINATES: protein motif:HMM:NF014567.1,HMM:NF020037.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MIWIASVSRA HLLHRHGITL AVEGNDARVR DHELYVARTL DAVRMAMDHV FQLYGEALIA 61 GARSPSGPIF LGSDPVLAGR LLAGTRIASG DGRIIAAVGR SPTALPADLL AWMGRAPMQD 121 GRLLISPPFR DPATGAERIY AIRRFMRAPD RTDRTNRILA IVPMAPAALL GVTGDAWGAT 181 NTDTVIIGDD GIVRARMIGD RVVPNVRLSG AEWAWLGLGP GAWDRIRHGD AHGRHSGEGG 241 RDHVARSASF HHARAYPLIV ASAVGHGATL NPFHWFGRVH LAGALTRTIA VLAVAWLAFR 301 AIDAQVRREL ALAENNRRLL VAQMMGRMGE WSWDAATDTV WRSPVLDWLY GDRGRQRKKL 361 ADILPGLDPE DRRRVEEAFH VVMATGEPCE FQRRGGAQDG GRRVRRVIAY PTRNAEGTII 421 GVHGIDQDVT TAKRLESLES RIVQLSRLDA MHLMAATLAH EINQPLAAAA NYLVASRRLL 481 ARPGTAPHPE IEDLILSGET QVRNAGQIVR RVREMVMKRD EHVPIVVSGA WHRAAELVEA 541 VTEDRAILFE TEIDEDAAMV IADEVQLSQV FTNLMRNAVE AVPAGPVLIG LRVRRDDKGC 601 VRLDVRDNGS GVAMPDHDVF APLETTKESG FGLGLIISRT IVEAHGGRIW IESSGAEGTV 661 VAFTLQNGVP //