LOCUS QJU57658.1 821 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 penicillin-binding protein protein. ACCESSION CP053346-1480 PROTEIN_ID QJU57658.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_07515" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009822736.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRIALRRGGG SSSLPPWLGK RWVRWLLALF GLLAIGWAIF WFLFIRGLPS TDALLAYEPP 61 LPTNVRSIDG TPVYSFARER RVELGFDELP KPLIEAFISA EDKTFFHHSG VNPLTFLNGV 121 YEYVTKYGSG ERAHGGSTIT QQLAKNLLIG DEYSPSRKIR EAVLAVRIEQ VLTKQQILEL 181 YLNQIFLGRN AYGVQSAARA YFGKDVDQLT LPEVAYLAIL PKAPSNYDPD RHEDRAKERR 241 AYVLREMHAN GYITGDQQAA ADAAPLGTVP RSDARRDVER QFEGHFMEEV RRELIDRYGE 301 ADEKGNHGVY TGGLWVRTSL NPVMQKAAEQ ALRQGLLRYD SAGGWRGRVG AIDPGAGWQA 361 ALRKLNPLTG LPEWRAAVVL EKSSGTATIG FMDGSQGKLP TWGANQPKRG VGGRAFDFLK 421 AGDVVLVARS GDAWALRSIP VVSGGFVAEN PHTGQVLAMQ GGFDPREPFN RATQALRQPG 481 SAFKPIVYSA ALESGMTPAS IIDDSPFCVF QTASLGTKCF RNFSGGYAGP QTMRWGVEQS 541 RNLMTVRAAS QTGMDKVVSL AKAMGVGTYP PYIAYSLGAG ETTVLRLTNA VAMLANQGRS 601 LKPTLIDYVQ DRHGKVIWRA DTRPCEGCNA KDWNGGAMPR PAPRGGQVLD AMSAYQMVHI 661 MEGVVLRGTA TALRDLGRPM FGKTGTNSGP TSVWFVGGSA DLVGGLYVGF DKPRPLGGYA 721 QGGTIAAPIF RQFAATAMEG MPVVPFKAPA GIRMVRIDRR TGKKVFSGWP DPGEYKPAII 781 WEAFKPESEP RRAVGKPEPV IAKPDKVRSD SDFLAREGGI Y //