LOCUS       QJU57625.1               816 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 glycosyltransferase protein.
ACCESSION   CP053346-1443
PROTEIN_ID  QJU57625.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_07325"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012744.1,HMM:NF024579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MFKTKKSAGV SVTPAVHRLI QQANAARASG GWSVAAEYFA AAVARDPSLY HVWMQLGHAH
       61 KESKSYQKAE QAYLKATELR PTAGEPYLHL GHLYKVTGDY VKAGRAYMHA VKVDPANADA
      121 VAELHRQLGA SSGMTRDRML QFLEQEFGED VVDTDEGLGR SVRQAKESLS KILAHLPGKA
      181 EEARLLRSAS MMLENIDRMA PADENEGEVA LIFDASDLIG YYSHARLPTG IQRVQIEAIT
      241 NALNAPNRQV KICCFIDGRE DWLEVPISQF RAITELSVRS GARDDPEWVS ALNRLHLTLV
      301 LADPLEFPDG AYLINLGTSW WLHNYFLFVR AAQEKHRIKY IPFIHDFIPI VTPQHCVKGL
      361 TQDFISWAIG VFEHAACYLV NSQATKRDLL KVAAILGHDV DPDDIAVIRL DADFRKPETR
      421 QLARGELAKW GLDNEPYVLF VSTIESRKGH VVAMDAWLEL IQRHGGRKTP RLVCVGKNGW
      481 LNDAVFQRLE QSDELASRVT ILSYLSDEEL SLLYRNCQFT IYPSLYEGWG LPITESLCYG
      541 KPVIAARSSS LPEAGGEFAV YAEAGSPVQL ANAVENMVFD PVYRAERQLK IATDFQPRTW
      601 SDVAQQIDDE IMSLVHSRPA LADHAIPKAK IGAYHPVTRN VATRIWPGIG SGEIFRTGLG
      661 WLWPDTWGCW TRPEGGELTI GLPSDRKPLR VYLLLQNFPN HTCPWRLRIK GLPSIDGELQ
      721 MGEHRWVSFD YPVLDDGGTL RMKLRGGWSE IIKMSTGGTI KEYSASVGLK GFFLCEADDH
      781 VARTKFLEAA SLGTISDLDA FREHLEPTQD EDDWNN
//