LOCUS QJU57625.1 816 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 glycosyltransferase protein. ACCESSION CP053346-1443 PROTEIN_ID QJU57625.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_07325" /inference="COORDINATES: protein motif:HMM:NF012744.1,HMM:NF024579.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFKTKKSAGV SVTPAVHRLI QQANAARASG GWSVAAEYFA AAVARDPSLY HVWMQLGHAH 61 KESKSYQKAE QAYLKATELR PTAGEPYLHL GHLYKVTGDY VKAGRAYMHA VKVDPANADA 121 VAELHRQLGA SSGMTRDRML QFLEQEFGED VVDTDEGLGR SVRQAKESLS KILAHLPGKA 181 EEARLLRSAS MMLENIDRMA PADENEGEVA LIFDASDLIG YYSHARLPTG IQRVQIEAIT 241 NALNAPNRQV KICCFIDGRE DWLEVPISQF RAITELSVRS GARDDPEWVS ALNRLHLTLV 301 LADPLEFPDG AYLINLGTSW WLHNYFLFVR AAQEKHRIKY IPFIHDFIPI VTPQHCVKGL 361 TQDFISWAIG VFEHAACYLV NSQATKRDLL KVAAILGHDV DPDDIAVIRL DADFRKPETR 421 QLARGELAKW GLDNEPYVLF VSTIESRKGH VVAMDAWLEL IQRHGGRKTP RLVCVGKNGW 481 LNDAVFQRLE QSDELASRVT ILSYLSDEEL SLLYRNCQFT IYPSLYEGWG LPITESLCYG 541 KPVIAARSSS LPEAGGEFAV YAEAGSPVQL ANAVENMVFD PVYRAERQLK IATDFQPRTW 601 SDVAQQIDDE IMSLVHSRPA LADHAIPKAK IGAYHPVTRN VATRIWPGIG SGEIFRTGLG 661 WLWPDTWGCW TRPEGGELTI GLPSDRKPLR VYLLLQNFPN HTCPWRLRIK GLPSIDGELQ 721 MGEHRWVSFD YPVLDDGGTL RMKLRGGWSE IIKMSTGGTI KEYSASVGLK GFFLCEADDH 781 VARTKFLEAA SLGTISDLDA FREHLEPTQD EDDWNN //