LOCUS       QJU57520.1               856 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 MMPL family transporter protein.
ACCESSION   CP053346-1320
PROTEIN_ID  QJU57520.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /geo_loc_name="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MMGAFVSRIV GWSIARPWRT LILALVLSAL ALTVALSRFA MSTDTADLIS PTVAWRQQER
       61 ATEAAFPQLS DTMLVVIDGK TPELAEEAAA RLADRLTADR AHFRRVARPD GGAFFQKEGL
      121 LFGSREDVSR TTAALVDAQP LLGPLAADPS LRGVASAIGT VAEGASRDPR AYTQAGPALR
      181 SLSDTIEARL AGKPAYFSWQ ALFAGGNDAL RPPTRRLLLL QPVLNHGDLE AGSAAADAVR
      241 STAGSLGLDP AHGVTLRLTG EVPLADEEFA TLQENIGFVG LVMALATLAA LWAATRSPRL
      301 VAAILLTTTL GLLITAAIGL LAVGRFNLIS IAFIPLFVGL GVDFGIQLSV RFRAERADGL
      361 DAPAAIAAAA RALGPSLSLA AAATFLGFGA FLPTAYVGVA ELGVIAGLGM IVALLLSVTL
      421 LPALILLFGG PAPSAATTLH RMEGADDWLA RHRRAILIAF GVSLALSIVL LRWVSFDFNP
      481 LHLRDPKAPS MATLADLARD PDRTPNVIDA LAPNHQTAQA LAKKLDALPE VRQVVTLDSF
      541 VPEDQPAKLA TINDAAMLLD LSLDPFSVAP APGDDEIVTA LRDAAAKLRS GPADAVRLAN
      601 AFDRLAAATP ASRADLQAVI TRPLGIMLEQ TRQALHPDAV TRATLPADLV RDWIAPDGRE
      661 RIQLFPAGNA SDNRVIHRFR DAVETVTPAI SGLPVATQAA AETVAGAFVQ AGVIAFLLVS
      721 LLLFAVLRDV REVAFTLAPV ILSIFLTLGT CVLIGQPVNF ANIIAFPLLF GVGVAFHIYF
      781 VMAWRGGETR LLGSSLARAV LFSALTTGVA FGSLWLSRHP GTASMGKILM ISLIWTLICA
      841 LIFEPALLGP PRQRRA
//