LOCUS QJU57520.1 856 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 MMPL family transporter protein. ACCESSION CP053346-1320 PROTEIN_ID QJU57520.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_06695" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010162780.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MMGAFVSRIV GWSIARPWRT LILALVLSAL ALTVALSRFA MSTDTADLIS PTVAWRQQER 61 ATEAAFPQLS DTMLVVIDGK TPELAEEAAA RLADRLTADR AHFRRVARPD GGAFFQKEGL 121 LFGSREDVSR TTAALVDAQP LLGPLAADPS LRGVASAIGT VAEGASRDPR AYTQAGPALR 181 SLSDTIEARL AGKPAYFSWQ ALFAGGNDAL RPPTRRLLLL QPVLNHGDLE AGSAAADAVR 241 STAGSLGLDP AHGVTLRLTG EVPLADEEFA TLQENIGFVG LVMALATLAA LWAATRSPRL 301 VAAILLTTTL GLLITAAIGL LAVGRFNLIS IAFIPLFVGL GVDFGIQLSV RFRAERADGL 361 DAPAAIAAAA RALGPSLSLA AAATFLGFGA FLPTAYVGVA ELGVIAGLGM IVALLLSVTL 421 LPALILLFGG PAPSAATTLH RMEGADDWLA RHRRAILIAF GVSLALSIVL LRWVSFDFNP 481 LHLRDPKAPS MATLADLARD PDRTPNVIDA LAPNHQTAQA LAKKLDALPE VRQVVTLDSF 541 VPEDQPAKLA TINDAAMLLD LSLDPFSVAP APGDDEIVTA LRDAAAKLRS GPADAVRLAN 601 AFDRLAAATP ASRADLQAVI TRPLGIMLEQ TRQALHPDAV TRATLPADLV RDWIAPDGRE 661 RIQLFPAGNA SDNRVIHRFR DAVETVTPAI SGLPVATQAA AETVAGAFVQ AGVIAFLLVS 721 LLLFAVLRDV REVAFTLAPV ILSIFLTLGT CVLIGQPVNF ANIIAFPLLF GVGVAFHIYF 781 VMAWRGGETR LLGSSLARAV LFSALTTGVA FGSLWLSRHP GTASMGKILM ISLIWTLICA 841 LIFEPALLGP PRQRRA //