LOCUS QJU57205.1 429 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 diaminopimelate decarboxylase protein. ACCESSION CP053346-956 PROTEIN_ID QJU57205.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /gene="lysA" /locus_tag="HL653_04835" /EC_number="4.1.1.20" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010123016.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MDHFELRDGS LHAEDVALAT IADAVGTPTY VYSTATIERH VRVFREGLEG VESGPEGPLI 61 AFAVKANPNK AVLATLAAAG FGADVVSGGE LMRARAAGIP ANKIVFSGVG KTADEMALAL 121 REGIFQFNLE SEPEAEMLSE VATTLGLTAP VAFRVNPDVE AGTHAKISTG GSEDKFGVPI 181 SRAMAAYARA AILPGLTVQG VAVHIGSQLT DLGPSRAAFS RVGALIAELR AAGHSIATAD 241 LGGGLGVPYD PAKPVPPSPA EYGAMVREVT AGWNVRLLFE PGRVIVGNAG VLLTRVIRVK 301 QGETQPFLIV DAAMNDLIRP SLYEAYHAIR AVTPTGAQFT ATVVGPICES GDTFAKRRTM 361 DEVKDGDLVA FMTAGAYGAT MASTYNSRGL TPEVMVSRHE WAIVRPRQTI ESLISADSLP 421 AWLEKETVA //