LOCUS       QJU56746.1               790 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 phenylalanine--tRNA ligase subunit
            beta protein.
ACCESSION   CP053346-423
PROTEIN_ID  QJU56746.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_02150"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKFTLSWLKE HLDTEADVSA IADALTRIGL EVESVEDPAI RLRGFTIARV LTAAAHPQAD
       61 KLQVLTVDAG DGKPPLQVVC GAPNARAGLV GIFGQPGAVV PANGMELRVA AIRGVESNGM
      121 MCSLRELELG ESHDGIVELP NDAPVGTLYA DYAGLADPVI DIAVTPNRQD CMGVRGIARD
      181 LAAAGLGRLK PLDVPTIRSD VALPVTIATQ DPEGCPAFFG RAVLGVTNGA SPDWMQRRLI
      241 AVGQRPISAL VDITNYVMLD HGRPLHVYDL AKLSGGLVAR KAKAGETVLA LNGKSYDLDE
      301 TMTVIADDAH VHDIGGIMGG EESGVSETTT DVLIECAYFT PETIARTGGK LGLTSDARAR
      361 FERGVDPAFL GDGLALATRL VTEICGGKPT EAMEAGEPPL GRHTFKYEPA ATLRLAGIEV
      421 APDRQRAILQ SLGFGVDGSW TVSAPSWRRD VDGVADIVEE IVRIEGLDNV PSVALPRSEG
      481 VAKPTATAEQ KLERGMRRAA AARGLDEAIT WSFLSEADAA AFGGSAWTLA NPISADMKAM
      541 RPSLLPGLIA AARRNRARGA ASIRLFEIGR RYLKEGERAT LGLLLVGDRA ARDWRTGKPG
      601 GFDALDAKAE VVALLAAAGA PADRLQVMEV TGTIWHPGRS ASLRLGPKTI LAELGELHPS
      661 LLKTLDLDAP AVAAEIYLDA IPARRESGRM RTAYAPPPLQ AVTRDFAFLA PRTMAADSLL
      721 RAIRGADKTA IVDVALFDLF EGAGLAEGET SLAVSVTLQP GEKSFTDAEL QAISAKIVAA
      781 AEKAGAKLRG
//