LOCUS QJU56741.1 712 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 AsmA family protein protein. ACCESSION CP053346-418 PROTEIN_ID QJU56741.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_02125" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010409007.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MVDLSHPPSA RDSSPADAPP PPAPAPVRDP ARTAIASVVS VVATIFGLIF LAWLVLFVTK 61 GRFLKHTFER VASRYMERDI RVAGDFNFYF DPIDVKFLAE GMTVSNPDWA KKPNLFASKL 121 IDTRIETLPL IFGKKQIEWL NLVDGTVDLE WDKAHKRNSW TFAGDTPFQM PLIRRAAVTG 181 TDIHYDDAAM QIFADVHFDP INAKDSRFAN NILFTGKGTA RGNPFTLNGS QTSPNALMAG 241 GRNQFELHVR AARTSVDVSG TLPAATQIEG ADLAVQVRGR NLRNLFDLAG IAVPDTRAYR 301 LRSHLTKRGQ DYEFTRIAGS YGNSDIGGAM TVTVPRTGTE DRLFLKADLA SRLVDMIDIG 361 PFIGYNPDKL ATQGATAAAT TQHARGAYPR ILPDAPLRVD AIKAFDAKVT YKVADIRQPF 421 VPISNILLGL DLDHSLMKLS PLNFDMAGGH VDSDISINAR QPAIVTDYDI RMSPTPMGKL 481 LARFGVNDSG TTGTIKARVK MTGTGNTVRD SLATSNGRIA VILPRGTFWT SYTQLSEFDI 541 GTFVQKMFEK KLKEPVQINC GLIGFTVRDG IAAADPILID TSKNVMTAKG GFSFKDELLS 601 FAFRADAKKF SVFSGQSPVG IGGHFAAPSF QIVTPELLLR GGVGVALGVL TPPAALLAFV 661 DPGDAKAAAC GPVLAGANAA AQRTLKGEPR KDIGKGKSAD VKAEKDKKPI KL //