LOCUS QJU56714.1 806 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 ligase-associated DNA damage response DEXH box helicase protein. ACCESSION CP053346-388 PROTEIN_ID QJU56714.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01975" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019515303.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSVRSPAPLP PKIAGWFAKR GWAPRRAQME MLDAARAGRH ALLIAPTGSG KTMAGFLPSL 61 VALAEEPAQG LHTLYVSPLK ALAIDVQRNL LDPITEMGLP ITVETRTGDT PSDRKARQRV 121 KPPNMLLTTP ESLSLLLSHA DAGFLFESLQ TIVVDEVHAF AGGKRGDLLA LCMARLQTLA 181 PRMRRVALSA TVADPDQYAA WLAPDGDIDA VAQVTGDPGA APDLAILLPE DRVPWSGHSG 241 RYAAAQVMAE IETHRTTIIF CNTRSLAELI FQDLWAVNEM KLPIGIHHGS LAIEARRKVE 301 AAMADGRLRA LVATASLDLG VDWGDVDLVI QMGAPKGSSR LLQRIGRANH RLEDASEAVI 361 VPGNRFEYLE ARAALDAVEA GELDHEVFRA GALDVLAQHV MGCACAAPFA EETLLAEVRS 421 ALPYSALSAE LFGQVLQFIA TGGYALKAYD RFKRLVKGED GRWRVSHPQF VQQYRMNAGI 481 IVEATMLNVR FKNGRALGKV EEGFAATLSP GDTFFFAGLS LEVIGAEVED VYVRATARPA 541 RIPTYGGARM PISTNLANRV RGYFAEPGQW ARFPDDVREW LEMQARRSRL PRPGELLVET 601 FPREGRHYMV VYSFEGWNAH QSLGMLITRR METAGLKPIG FVASDYAIAT YSLEPVTDPA 661 PLFDKDILEH EFVDWVQQSS LLKRAFREVA VIGGLVERQH PGKRKTGRQV SFSTDLIYDV 721 LRKYEPDHLL LRAAWDDARA RMTDVGRLAD LLDRAAGTML HVDLPKVSPL AVPVLVLIGR 781 ERVAQGSTED ALLIEAEALA AEAMAE //