LOCUS       QJU56714.1               806 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 ligase-associated DNA damage response
            DEXH box helicase protein.
ACCESSION   CP053346-388
PROTEIN_ID  QJU56714.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSVRSPAPLP PKIAGWFAKR GWAPRRAQME MLDAARAGRH ALLIAPTGSG KTMAGFLPSL
       61 VALAEEPAQG LHTLYVSPLK ALAIDVQRNL LDPITEMGLP ITVETRTGDT PSDRKARQRV
      121 KPPNMLLTTP ESLSLLLSHA DAGFLFESLQ TIVVDEVHAF AGGKRGDLLA LCMARLQTLA
      181 PRMRRVALSA TVADPDQYAA WLAPDGDIDA VAQVTGDPGA APDLAILLPE DRVPWSGHSG
      241 RYAAAQVMAE IETHRTTIIF CNTRSLAELI FQDLWAVNEM KLPIGIHHGS LAIEARRKVE
      301 AAMADGRLRA LVATASLDLG VDWGDVDLVI QMGAPKGSSR LLQRIGRANH RLEDASEAVI
      361 VPGNRFEYLE ARAALDAVEA GELDHEVFRA GALDVLAQHV MGCACAAPFA EETLLAEVRS
      421 ALPYSALSAE LFGQVLQFIA TGGYALKAYD RFKRLVKGED GRWRVSHPQF VQQYRMNAGI
      481 IVEATMLNVR FKNGRALGKV EEGFAATLSP GDTFFFAGLS LEVIGAEVED VYVRATARPA
      541 RIPTYGGARM PISTNLANRV RGYFAEPGQW ARFPDDVREW LEMQARRSRL PRPGELLVET
      601 FPREGRHYMV VYSFEGWNAH QSLGMLITRR METAGLKPIG FVASDYAIAT YSLEPVTDPA
      661 PLFDKDILEH EFVDWVQQSS LLKRAFREVA VIGGLVERQH PGKRKTGRQV SFSTDLIYDV
      721 LRKYEPDHLL LRAAWDDARA RMTDVGRLAD LLDRAAGTML HVDLPKVSPL AVPVLVLIGR
      781 ERVAQGSTED ALLIEAEALA AEAMAE
//