LOCUS QJU56670.1 516 aa PRT BCT 18-MAY-2020
DEFINITION Sphingomonas sp. AP4-R1 Do family serine endopeptidase protein.
ACCESSION CP053346-337
PROTEIN_ID QJU56670.1
SOURCE Sphingomonas sp. AP4-R1
ORGANISM Sphingomonas sp. AP4-R1
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingomonas.
REFERENCE 1 (bases 1 to 5252057)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 21605
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5252057)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
South Korea
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: APR-2020
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 99.0x
Sequencing Technology :: PacBio RSII
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/11/2020 21:04:38
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,788
CDSs (total) :: 4,729
Genes (coding) :: 4,613
CDSs (with protein) :: 4,613
Genes (RNA) :: 59
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 50
ncRNAs :: 3
Pseudo Genes (total) :: 116
CDSs (without protein) :: 116
Pseudo Genes (ambiguous residues) :: 0 of 116
Pseudo Genes (frameshifted) :: 56 of 116
Pseudo Genes (incomplete) :: 58 of 116
Pseudo Genes (internal stop) :: 26 of 116
Pseudo Genes (multiple problems) :: 22 of 116
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingomonas sp. AP4-R1"
/mol_type="genomic DNA"
/strain="AP4-R1"
/host="Malus prunifolia (crab apple)"
/culture_collection="KACC:21605"
/db_xref="taxon:2735134"
/geo_loc_name="South Korea: Naju-si"
/collection_date="23-Oct-2019"
/collected_by="Jun Heo, Soon-Wo Kwon"
/identified_by="Jun Heo, Soon-Wo Kwon"
protein /locus_tag="HL653_01710"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019830995.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRYAYAITAA MLLGGAAATV TLQQPVGAQV AQNAPSQMAA VAPRGAPMSF ADLAAKLQPA
61 VVNISTTQKV QLKQQQQNPF AGTPFDEFFR RFGGQGGQGG GATPQTREAV SLGSGFIISA
121 DGFIVTNNHV ISGVPTDQGK VTISSIKVTL TDRKEYTATV VAKDPTSDLA VLKIDAKNLP
181 FVQFGDSTKS RVGDWVIAIG NPFALGGTVT AGIVSAIHRS IGSGPYDRYI QTDAAINQGN
241 SGGPMFDLNG NVIGINTAIY SPTGGNVGIG FAIPAEQAKP VIQQLMKGTP PKRGYFGVVI
301 QPMDDDIAAG LGLPKDVGEI VARVEPGQPA ARAGIQQGDV IVKVNGTDVT PDNTLSYIVA
361 GLPVGSRVPV EYIRNGKHAT TTAVVTQRPS EDQLASAVGD DDEDGPIGNG QDTPAVKNAL
421 GVTLQSMSPG IARQIGVPET TTGAVITSVD PSSDAATKGL QPKDIIVAVG QRRVATVQEA
481 AAAVEAAKKA GMKTVLLLVQ RGTRPAQYLG VDLTGK
//