LOCUS QJU56607.1 597 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 aminopeptidase P family protein protein. ACCESSION CP053346-266 PROTEIN_ID QJU56607.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01350" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013038804.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSSHTDRLAA LRDELARRRL DGFVVPLTDE HMSEYVGAYA QRLAWLTGFE GSAGSAVVLP 61 AEAAIFTDGR YTLQVREQVD GTNWSYQSVP QTSVAQWLGE HAKEGARIGY DPWLHTRGWV 121 IQAAKALRAK GAELIAVETN PVDAVWPDKP LPSAARLVVQ PDDLAGKNSV EKRAEMADWL 181 TAQGADAAVL SALDSIAWTF NVRGADVDRT PVALAYALVG ADGTADLFVA PDKLTDEVRQ 241 HLGNAVRLHP RHAFADYLSA LGGKRIVADP DRAVAAIFGT LEQAGARILP LRDPAVLPKA 301 IKNGAEMAGH RAAQARDGAA LSRFLHWLSV EAPKGGVTEI SAQEKLLSFR EETGRLRDLS 361 FDTISGAGPN GAVVHYRVSE ESNRPLEIDS LYLVDSGGQY QDGTTDVTRT VAIGTPTAEM 421 RDRFTRVLKG HIALATAIFP EGTRGGQLDT LARQFLWAAG LDYAHGTGHG VGAFLAVHEG 481 PQRIAPVGGA FVGGDEPLQA GMILSNEPGY YKTGEYGIRI ENLVLVGPRE APGAEKKILG 541 FETLTFAPID RALIDLDLLT PAERAWMDAY HAKVAEVVGP QLEGAAAEWF SRAVAPL //