LOCUS QJU56597.1 632 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 response regulator protein. ACCESSION CP053346-254 PROTEIN_ID QJU56597.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01290" /inference="COORDINATES: protein motif:HMM:NF012301.1,HMM:NF012722.1,HMM:NF014567.1, HMM:NF017077.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MVEATPRKIP LMSLAGLGIV IVAGLIALLI ASGVSSSNRW ADHSVQVQTR IVELGERLAT 61 HDGALRGYMI SREPAMRDDM RDSRHDILLR VAELRELLRD NEPQLREIDA VAPLIRQRLI 121 YGEHMSAERD HKPLYAMNLS AAQPGSLPLI LAIRQHLGRM FATESALLAA RQKQAQQRTA 181 LLSIGLVATV LLVVVIAYLT ISEAQARSLS IEAAHREARA AAEAAESEMR AREQVEEQLR 241 HIQKMESIGQ LTGGIAHDFN NMLAVVIGSL DMARRRIDDP DRLQRSLASA MEGAGRAASL 301 VSRLLAYSRR QSLAPAAVDP NRLVGDMSNL LGRTLGEGIE VETELAGDIW PTFVDPLQLE 361 NAIVNLAVNA RDALGGRGRM TIRTGNATLD EGYIRSHPDA APGDYVMIMV RDFGSGMPPD 421 VLARAFDPFF TTKGVGRGTG LGLSQVFGFV KQSGGHIGIE SVVGHGTTIR LFLPRHEAAP 481 AIVREPAPVA GPAPVRGGER ILLVEDDDRV RQFSRDAVAD LGYVVTAAPD GVAALALIEQ 541 SPDYAILFTD VVMPGMGGTE LAAAAREKQP NIRILYTTGY AHEAIAREGL LEPGVDVLLK 601 PFTVAQLAQK LRDVLDKAGP DAVQAAASGG NA //