LOCUS QJU56595.1 932 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 [protein-PII] uridylyltransferase protein. ACCESSION CP053346-252 PROTEIN_ID QJU56595.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01280" /EC_number="2.7.7.59" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010544327.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTTRFDHLPA RRAIIDRRAI ADALEALPTA DATTLRLSAT PVLREALAAG RDEIARRLAE 61 SPSSGNEIAA SYAFLTDQIL RLAYDFTTQR LFPNHHPSAG ERLALAAVGG YGRGEMALHS 121 DIDIAFLTPW KQAAWAEQVI ESMLYTLWDL GLKVGHSSRS IDEMVRMANG DLTIRTALLE 181 ARYIWGDQAL YDEAGRRFEK DVMASTARAF VAEKLAERNA RHERMGDSRY VVEPNLKEGK 241 GGLRDLHALF WIGKYAYQVR DVGDLVERGL LTDQELRRFR KAENFLWAVR CHLHILSRRP 301 EDRLTFDVQA EIARRMRYAD RPGKSAVERF MQHYFLIAKE VGDLTAMFLA HLDETFAAKG 361 RRFGITLIGR KPRKLEGFVL DRGRLAAPSD TFFAENPVRL LELFALADKH QLEVHPLTLR 421 MAGRDAKLID NQVRADPVAN RHFLQVLASR RDPERVLRTM NEAGVFGRFV PDFGRVVAQM 481 QFDMYHHYTV DEHTLRAIGL LSRIERGLLE EAHPGAAKIL SQVVCRRALY VAVLLHDIAK 541 GRGGDHSTLG AEVARKLCPR FGLKPAETET VAWLVEQHLL MSATAFKRDL ADFKTVLDFA 601 ERVQSPERLR QLLLLTTVDI RAVGPGVWND WKRQLLGTLF HAAEEVLRLG HQQTGRNERI 661 KLKQAELGVE LGWSRQRFDA YRKRFPDSYW VAEGVDILER NARLISAADA GEKPLSIATQ 721 PDPQRGATLV TIYAADHPGL FYRVAGAIHL AGASIIDARI HTTRDGMAID NLLVQDPFGK 781 PFDDPMRLRR LATAIEDALA NRSQLAAKLA TKPSPRTRAE AFVVEPNVLI DNRASNRYTV 841 VEVNAHDRPA LLHALAYALF QAKVTIRSAH VATYGTRAVD TFYLTDLLGD KIEGAVRLRT 901 LERLLLAAAG GGEPEPEEEA PKREREKEKV KV //