LOCUS       QJU56595.1               932 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 [protein-PII] uridylyltransferase protein.
ACCESSION   CP053346-252
PROTEIN_ID  QJU56595.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_01280"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTTRFDHLPA RRAIIDRRAI ADALEALPTA DATTLRLSAT PVLREALAAG RDEIARRLAE
       61 SPSSGNEIAA SYAFLTDQIL RLAYDFTTQR LFPNHHPSAG ERLALAAVGG YGRGEMALHS
      121 DIDIAFLTPW KQAAWAEQVI ESMLYTLWDL GLKVGHSSRS IDEMVRMANG DLTIRTALLE
      181 ARYIWGDQAL YDEAGRRFEK DVMASTARAF VAEKLAERNA RHERMGDSRY VVEPNLKEGK
      241 GGLRDLHALF WIGKYAYQVR DVGDLVERGL LTDQELRRFR KAENFLWAVR CHLHILSRRP
      301 EDRLTFDVQA EIARRMRYAD RPGKSAVERF MQHYFLIAKE VGDLTAMFLA HLDETFAAKG
      361 RRFGITLIGR KPRKLEGFVL DRGRLAAPSD TFFAENPVRL LELFALADKH QLEVHPLTLR
      421 MAGRDAKLID NQVRADPVAN RHFLQVLASR RDPERVLRTM NEAGVFGRFV PDFGRVVAQM
      481 QFDMYHHYTV DEHTLRAIGL LSRIERGLLE EAHPGAAKIL SQVVCRRALY VAVLLHDIAK
      541 GRGGDHSTLG AEVARKLCPR FGLKPAETET VAWLVEQHLL MSATAFKRDL ADFKTVLDFA
      601 ERVQSPERLR QLLLLTTVDI RAVGPGVWND WKRQLLGTLF HAAEEVLRLG HQQTGRNERI
      661 KLKQAELGVE LGWSRQRFDA YRKRFPDSYW VAEGVDILER NARLISAADA GEKPLSIATQ
      721 PDPQRGATLV TIYAADHPGL FYRVAGAIHL AGASIIDARI HTTRDGMAID NLLVQDPFGK
      781 PFDDPMRLRR LATAIEDALA NRSQLAAKLA TKPSPRTRAE AFVVEPNVLI DNRASNRYTV
      841 VEVNAHDRPA LLHALAYALF QAKVTIRSAH VATYGTRAVD TFYLTDLLGD KIEGAVRLRT
      901 LERLLLAAAG GGEPEPEEEA PKREREKEKV KV
//