LOCUS       QJU56585.1               634 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 molecular chaperone DnaK protein.
ACCESSION   CP053346-241
PROTEIN_ID  QJU56585.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="dnaK"
                     /locus_tag="HL653_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006956250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAKVIGIDLG TTNSCVAVME GGSPKVIENA EGARTTPSIV AFAKDGERLI GQPAKRQAVT
       61 NPDNTIFAVK RLIGRRFDDP VTKKDTELVP YHIVKGANGD AWVQAGGEDY SPSQISAFTL
      121 QKMKETAESY LGETVTQAVI TVPAYFNDAQ RQATKDAGRI AGLEVLRIIN EPTAAALAYG
      181 LDKDTNKTIA VYDLGGGTFD VSVLEIGDGV FEVKSTNGDT FLGGEDFDAK VVEYLAQGFK
      241 ASEGIDLTKD RLALQRLKEA AEKAKIELSS TATTEVNLPF ITADATGPKH LVKQITRADL
      301 ERLVEPLITR TIEPMKKALK DAGLSAGDID EVVLVGGMTR MPKVREAVKA FFGKEPHTGV
      361 NPDEVVAIGA AVQAGVLQGD VKDVLLLDVT PLSLGIETLG GIMTKMIDRN TTIPTKKSQT
      421 YSTADDNQNA VTIRVFQGER EMAQDNKMLG QFDLVGIPPA PRGVPQIEVT FDIDANGIVN
      481 VSAKDKGTGK EQQIKIQASG GLSDSDIDQM VKDAEQFAEE DKKRRASAEA KNNAESLIHS
      541 TESQLREHGD AVEAGLKSEI EGAIVEARAA VESNDAEKMT EKANALAQVA MKMGQAIYEK
      601 QQAAGGDAAA GAAPGAGQGE DVVDAEFSEV DDNK
//