LOCUS QJU56576.1 758 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 TonB-dependent receptor protein. ACCESSION CP053346-231 PROTEIN_ID QJU56576.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01175" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010335887.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLLSNTAMAR CLALIGMATI GGAAFAQAAP ATGEAAEPAA APASDASSAG DIVVTAQKRS 61 QRIQDVPVAV QVLGGEALTS QGVRQFADLT KATPSLLIRP SEQPVNNSIS IRGIGTFAFS 121 PSVEPSVAVQ IDDVPVQFIA RAFADLSDID RVEVLRGPQS TLYGRAASAG LINIITQNPT 181 ADLTGRIGGV VTTDREYAVN GAISGPLTDT LGFRLNANYD KFEGNVRNLG TGDRVNGFRT 241 LSIKGKVVWD PTSNLNIAVS GGYIDGTTTI GRPFIRLGAA ARLRGVAAYD PSVFAPGIVA 301 TEDNTKVVNN INSGTNYTDY SASVRASLDV GFASLMSITG YDKFRQFDIL DQDESAVAAL 361 DNRQFGTFRT HSWSQEFRLV APGKNRFRYT LGLYYSDLEL SRVFQRGPFF SIANWYATNG 421 TRQYAAFGQL EYDILPNTTL IGGARAGKNK IDYRFTDYAA TGVPTFAGND SANYETYKAG 481 VQQKFTPDIM GFVTFATGYK GQAYDIGTGF NLVRQNSGPV QPERSKDWQI GLKTQFFDRH 541 VTFNVTLFDT RFKNFQAQGI ETLSDGTTNF RLANVGRLRT KGVEVEASWR AATDINFSGG 601 VTYNDAKITQ FLGAQCYPNQ TAAQGCVGTP ARQNLAGFRP PQAPKWKLAA SGEYTPSLTQ 661 SLDGVLQASY SYQSAINFSI NQDPQTYQPG YGIANLSIGV RAPDRKWEAV AFVNNLFDKH 721 YFSNMNNDTG NHANQLATLG YLARDYNRYG GVRVSYKF //