LOCUS       QJU56576.1               758 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 TonB-dependent receptor protein.
ACCESSION   CP053346-231
PROTEIN_ID  QJU56576.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLLSNTAMAR CLALIGMATI GGAAFAQAAP ATGEAAEPAA APASDASSAG DIVVTAQKRS
       61 QRIQDVPVAV QVLGGEALTS QGVRQFADLT KATPSLLIRP SEQPVNNSIS IRGIGTFAFS
      121 PSVEPSVAVQ IDDVPVQFIA RAFADLSDID RVEVLRGPQS TLYGRAASAG LINIITQNPT
      181 ADLTGRIGGV VTTDREYAVN GAISGPLTDT LGFRLNANYD KFEGNVRNLG TGDRVNGFRT
      241 LSIKGKVVWD PTSNLNIAVS GGYIDGTTTI GRPFIRLGAA ARLRGVAAYD PSVFAPGIVA
      301 TEDNTKVVNN INSGTNYTDY SASVRASLDV GFASLMSITG YDKFRQFDIL DQDESAVAAL
      361 DNRQFGTFRT HSWSQEFRLV APGKNRFRYT LGLYYSDLEL SRVFQRGPFF SIANWYATNG
      421 TRQYAAFGQL EYDILPNTTL IGGARAGKNK IDYRFTDYAA TGVPTFAGND SANYETYKAG
      481 VQQKFTPDIM GFVTFATGYK GQAYDIGTGF NLVRQNSGPV QPERSKDWQI GLKTQFFDRH
      541 VTFNVTLFDT RFKNFQAQGI ETLSDGTTNF RLANVGRLRT KGVEVEASWR AATDINFSGG
      601 VTYNDAKITQ FLGAQCYPNQ TAAQGCVGTP ARQNLAGFRP PQAPKWKLAA SGEYTPSLTQ
      661 SLDGVLQASY SYQSAINFSI NQDPQTYQPG YGIANLSIGV RAPDRKWEAV AFVNNLFDKH
      721 YFSNMNNDTG NHANQLATLG YLARDYNRYG GVRVSYKF
//