LOCUS QJU56573.1 510 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 NAD(P)/FAD-dependent oxidoreductase protein. ACCESSION CP053346-228 PROTEIN_ID QJU56573.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01160" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009820383.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPHTAPSLSV DVAIIGAGPA GLTAGYLLSK DGVRVAIAEQ DPHQVGGISR TVEHEGFRFD 61 IGGHRFFSKS REVVALWDEL LPDDFIERPR MSRIYYGGRF YSYPLRAFEA LRNLGLLRSA 121 ACMASYFRSR AFPRRAVRSF EDWTVNQFGA KLFSIFFKTY TEKVWGMGCD EISADWAAQR 181 IKGLSLGAAV IDGLKRSLGL HRKPNDGQAA KTLLESFRYP RRGPGMMWDA ARDRIVEAGG 241 DMLMGHRLHR LSREGDGWRM IVRGPDGERT IRAKHVISSA PIRELIPRIH PLPATAPRAT 301 ALRYRDFLTV ALKIRSPDLF PDNWIYIHEP GVKVGRIQNF RSWSPEMVPA EDVACVGLEY 361 FCFEGDGLWS MPDADLVALA TREMATLGLC DPALVIGGVV VRQEKAYPIY DDAYADHVAA 421 IRADLEAHCP DLHLVGRNGM HRYNNQDHAM MTAMLTVRNI LAGQPLYDIW DVNEDAEYHE 481 GGRMGEADGA SDDPRAALAS VRAVPRRIAA //