LOCUS QJU56572.1 818 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 DUF5117 domain-containing protein protein. ACCESSION CP053346-227 PROTEIN_ID QJU56572.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01155" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008831465.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAYFGFGRSI ARAALAWGLL AGCATAALAA PEAVATSKDG ALLPVSVDRA DGRMLVTLPP 61 MAADGTYGRF LYATVLRTGL GSATVRLDRA MNGPTHVLAF RRFGKKVAAV FENPQFRASG 121 TAAVEAGAKG SFPESIVWMG DIVSQGPAGV TVDLSSFFTQ DVMDIAATLN SETSGFRLSE 181 ALSATDAGSV KVFPDNIEVD AYQTFVADKP GKQVTMIASE PRKVSLIVHH SLVRLPGPGY 241 TPRRYDIRTG GFFAPVYDYG TPLGQPIVND LAARFRLEKT DPNAARSAVK KPIVFYIDDA 301 APEPIRTALE EGVSWWNQAF DAAGFVNAFQ VKPLTPDIDP LDIRYNVVNW IDRLTRAWSW 361 GQWVIDPRTG EIVKSSVILG ALRVRQDITI FESLVGKDQE NTGGPNDPSR AALARIRQLG 421 AHEVGHAIGF VHNFAGSMQG RISVMDYPGP RIGLKDGQID LSDAYATGIG TWDKFTVDWL 481 YGQPKPGEDA EKVAEAKAAA MEKTGMIFST DIDGRAPETP SPTANMWDDG TDSVGELAKL 541 MEVRRIGLAR FGPQVLNPGE PLSNLRRVFV PLWLLHRYQM DAAAKLVGGV DYPYGVAGGN 601 RPMAKVVPAA DQAKALSGLL ATLSPDALTV PAKLLPMLSM GVNGRSDPQF DNEVFANAGS 661 AVFDPLVATD VAARQMLETL LAPERLTRVY EQKLVDPGQL GLDTVLDRLT ATVVDRHATA 721 VERQIAYRAV LTLARTRMNP KTSPNVALLL EGRLRGFADR FGAAKGESEE ALWSRGLAAL 781 LRDKEALRAA LADKADQARI PPGMPIGGSG GWFDDLDS //