LOCUS QJU56567.1 1066 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 DUF4981 domain-containing protein protein. ACCESSION CP053346-222 PROTEIN_ID QJU56567.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01130" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007662879.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAEVTAPAPP IQPQVDASRP DWENPAVFAI GKQPARATGF PFESRERAIA GHRTKSDRFV 61 LLTGLWKFSF SPSADALPQG FEKPDYDVSG WKDIKVPSDW QAEGYDQARY FNITYPFPAN 121 RPLIPHATNP VGSYRRDVDV PAGWAGEDVI LHIGAAGSAY YVWVNGQKVG YSEDSKLPSE 181 FDVTRFLHPG KNVVAIQVYR WSDGSYLEDQ DFWRVSGIER EVFLMAAPKT RIRDFFVHAG 241 LDDSYRDGKL AVDLAVTPSS AATTARIVLL DKDDKTQLLT ASAPVKAGTA ERSVTLNATL 301 PNVRAWSAET PNRYMLLVEL YDSKGAILLS TYSRIGFRSV AMKNGVVTVN GKPITIRGVN 361 RHEHDPVTFH VLSPELMERD IQLMKQNNIN ALRTSHYPND PRIYDLADRY GLYVMDEADI 421 ESHHYMEWSN NHPEQRGKYQ IGFDPAWEGA HVSRVMNMVE RDKNHPSVIF WSLGNEAGIG 481 PNFAKAAAAA KARDPGRLIS YLGWGTWENQ REHRPNDYAD IYAPMYDSAA KLLDYATNFN 541 FRQPLIECEY AHMMGNSGGD LKDYWDVIYA HPDKLQGGFI WDWVDQSMSR KTADGRSYWG 601 MGGEYGPNPG GELEFGDGLT QSDRTPNPQL FELRKVYAPV QFADFDAAAG KVRVINRNDF 661 IDLSHYAFSW QVANDGVVVA RGDLPALATP AHGQETIPLS LPMIKRKPGS ELMVTIVARA 721 KADTTQGVAA GQVIGWEQFP MGNVQPADAP VPSGRVTLTD GRGRVTLSAG GAELTIDRAT 781 GLIDHYAAGG QTLLSGGAPN FTRAATDNDI GTGTIKTHAI WQQASDARTV EAIEPRRLDD 841 GRAEVTVRYA VGEGATRFVT RYVMNGDGSL AVEGDMTPLK ADLPDPLRVG LSFAMPTAFD 901 TLEWYGRGPH ETYADRKTGA PIALWRGKIA EQNHDYMRPQ ETGNKVDVRW MELVRAGAPG 961 LRVEGAQPLS MNALAFPYAD LARRAPGTAK SSDIVPHDHV SLLIDAAQVG VGGDDQWTKW 1021 GRSLPKYRVP LAPLHYAFRL KPFDGPGTTP DAARPASATS SPEIVP //