LOCUS       QJU56527.1               552 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 DNA repair protein RecN protein.
ACCESSION   CP053346-170
PROTEIN_ID  QJU56527.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="recN"
                     /locus_tag="HL653_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLTRLAIRDV VLIEALDLDF GPGLATLTGE TGAGKSILLD SLGLALGARA ESGLVRNGAA
       61 QASVAASFDL PADHPALAIL DEGGLEREPG EPLVIRRQLR ADGGSRAFVN DQPASAGLLR
      121 ALGGTLVEIH GQHDDRGLLN ARGHRALLDA FARSQTGAVA SAHARWKASE EALAHAEAEL
      181 ESAARDREWL EHAVAELRKA APEPGEEASL AEARADMQKG ARLAEELSGV SGHLDGSDGA
      241 LAQLRQATRR LDRIAAEDER LAEALAALDR ALVEAGEAED RLAAAGEAFA FDPARLEAIE
      301 TRLFDLRALA RKHRVEPDHL AALTEELSGR LDRIEAGGAG IAALAREVSL SREEYEAAAD
      361 ALTAARTAAA ARLDAAVAGE LAPLKLDAAR FRTVVEPLPE AQWGAAGRDR VEFEIATNPG
      421 APFAPLIKIA SGGELSRFIL ALKVALAEEG GAGTMIFDEV DRGVGGAVAS AIGERLARLA
      481 QTTQLMVVTH SPQVAARADR HWLIEKRSDG LVARTGVHVL GAAERREEIA RMLSGAEITD
      541 EARAQADRLL VA
//