LOCUS       QJU56511.1               785 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 TonB-dependent receptor protein.
ACCESSION   CP053346-154
PROTEIN_ID  QJU56511.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_00780"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012801.1,HMM:NF019335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAASCACWIP PLASLLVTAP AAAAPADDLP FDIAAGTVAA SMSAISDKAG VSIGWTAADA
       61 SVRTRAVKGR MPVADALRAA LHGSGLRAVP GGSGTFRIEH AQPFPLIGRR RPIDRPVVAG
      121 GGPPPDEDPA APIIVTGQKR RQLLQGIPAS LSRVDLADTD AGKVSLASRD LALSMEGLSL
      181 TNLGPGRNRP FIRGVADSPF NGNSQSTVAV QLDEARITFD APDPDLRLID MEQVEILKGP
      241 QGPLYGSGAL GGIYQIVTRK PDLTDIAGAV RLSGEAVQHG GIGGGVEGVL NLPIATDSLA
      301 IRAVGYDTRE GGWIDNIDGR SNANVTTTRG GRLALGWAID PVWMLDVSGA VQDVNSRDTQ
      361 YVTDDETVQR YARIAEPADN DFREAAATLR GRIGGLDLLA TGSYVDQQVD SILDSSDSSA
      421 DFGLSGASRF VDQRAYSIAN GEVRLSPAGS SRWLLGASYL RSTSRDTGTI EGTTQSLTVE
      481 SLDRVVTEMA IFGEATVPLW RHISATAGAR LYRSVADNEA SERHGGTSAR FAKFFASPSL
      541 SLSWAPSTHH LVYLRYARAL RPGGLAAAGE ATSRRFDSDE LGTFDLGYRG EPIAGMLTLN
      601 GSLFHTRWNH IQADYLLSNG LVATRNAGLA RITGAEASAD LTPAPRWQIS AGATYVRALL
      661 VKTEDGSKLD DRRLPVTPNI TARLTARYEF PLAGWTTRLS AQANYIGRAR LFFDEDLDRQ
      721 MGNYATAQTA AFFSRGRLTI GGRIDNLLDI QGDTFAFGNP FSIMAGRQYT PLRPRTFTLS
      781 LARSW
//