LOCUS QJU56505.1 631 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 HAD-IIIC family phosphatase protein. ACCESSION CP053346-146 PROTEIN_ID QJU56505.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_00740" /inference="COORDINATES: protein motif:HMM:TIGR01686.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSEYASLKIF EATAAIKLVV WDMDDTFWHG TLSEGGVTLI DRNISIVREL VDRGIMSSIS 61 SKNEHEAVKQ VLADAGIWDL FVFPQISWNA KGGALETIIN HANLRADNIL FVDDNPINLE 121 EIRFRFPTMM VAHPDEVLEG LLDLPQAKGK DDRKHSRLEQ YKNLEKKVSE QTGTTLSNED 181 FLRQCEVKLS FDFDVEAHFD RIVELVNRSN QLNYTKVRLE TDEAIADFRA KLQRHDIMSA 241 AISARDRYGD HGMIGFYMQH KDERQNRLIH YVWSCRMMNA GLEQYVYERI GSPDITVAEP 301 VSNPIVTFPK IDWIEEVAAN DDGGASALAA QQLLLIGSCD LSAVASYCSR DRREYVNAVK 361 NDIMTRCDDF GFILNDPAKV AASSVIETLP AWGRDEFLDF HRELPQRDVV IISLSAALRG 421 AHLVTSDDVV VRVHPNGLGE HIDAHPWEEF LAPCSFYGLD LTQKLALLNE SFDHVRRTAK 481 PGAQIFVLGA NTRDAAMPLS ATDRELMTTY NAVCEAYCAP LADWHYVSID AVVPKEQLVD 541 DRHYTRIGYF AIATDINRRI AEAAPAIEAA GEAPHAAAAS GRPFDLVKAI RAGQRLSRFT 601 VFGPERKDQG MIALSRRVLN RSLKRVVAAV R //