LOCUS QJU56465.1 568 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 beta-xylosidase protein. ACCESSION CP053346-100 PROTEIN_ID QJU56465.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_00510" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007678076.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAGKSGFCGA LTLLGGLLAS TASLAQAPAS GPSIPVTMTV DAGKPLGPLK PIWRFFGADE 61 PNYATMKDGR KLLDHLGKLR PEQVYFRAHN LLNTGDGTAA FKWGSTDIYK EDAAGKPIYD 121 WTIADHIIDT YRARGIHPYL QLGFMPEALS SAPKSTPYQH NWRPGFSYKL IEGGWNAPPK 181 DYGRWAELIY QWTRHNIERY GRDEVARWYF EVWNEPNGES YWKGTPEEFQ KMHDYAVDAV 241 RRALPEAKVG GPDAAGTGGA FMDAFMAHLA RGTNYATGKI GTPTDFLAFH AKGQPSFVDG 301 HVRMGIATHL RGVNNGFAKI AAVPEMAHKA IVIGESDPEG CAACPGPQNA YRNGTMYSSY 361 TVASFARIWD LADTNKVNLD GALTWSFTFE DQPWFAGYRQ LATNGIDLPV MNVFRLFAMM 421 GETRIGATSS GEVPLAAIMA DGVRAAPDVG VVATKAADGT VAILVWNYHD DDVAGPDAAI 481 HLDLAGLGAG GTRTITEWRV DKTHADAFSA WAAMGSPQSP DEKQYAVLEK ASEMAPTVRP 541 TSLAVRSGKA GLDVTVPRQG VMLLTVAR //