LOCUS       QJU56455.1               532 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 protein translocase subunit SecD protein.
ACCESSION   CP053346-87
PROTEIN_ID  QJU56455.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="secD"
                     /locus_tag="HL653_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLDFPRWKVW GIILVLAVGV FLALPSLMPE STARGLGLGG MPRINLGLDL SGGSHLKLEA
       61 DTADLAKQNL AKMEDTIRTE MRRGDTKIGI GDISTANGRI SFFVRDIAQL DAAVERARQQ
      121 TSAVGVTGQR DWNVAVVDST RIVMTQTQAG LDDAVDKAMQ TATEVVRKRI DELGTREPTI
      181 VREGKDRILV QVPGLADPAG LKALLGKTAK LEFKLVDLTA DPAAVAANRA PPGSQIVPYP
      241 GNPGGAPLIA VQRRVIISGD DLIDAQVAND QNQQSVVSIK FNSEGGRKFA RVTQENTGKP
      301 FAMILDGSVL SAPNINEPIL GGNAQISGNF TVDSANQLAI ALRSGKLPVA LKVIEERTVG
      361 AQLGADSIHA GVVASIIASV AVIVFMLVTY GRFGVYANLA VVLNIFIILA VMAILNATLT
      421 LPGIAGFVLT IGTAVDANVL INERIREERR RGRNVVQSVE LGYKEASRTI FEANTVHAIS
      481 GLIMLGLGSG PVKGFAVVLL IGICTSVFTA VLFTRMLVAL WLRKARPTEI TI
//