LOCUS QJU56455.1 532 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 protein translocase subunit SecD protein. ACCESSION CP053346-87 PROTEIN_ID QJU56455.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /gene="secD" /locus_tag="HL653_00440" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013847776.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLDFPRWKVW GIILVLAVGV FLALPSLMPE STARGLGLGG MPRINLGLDL SGGSHLKLEA 61 DTADLAKQNL AKMEDTIRTE MRRGDTKIGI GDISTANGRI SFFVRDIAQL DAAVERARQQ 121 TSAVGVTGQR DWNVAVVDST RIVMTQTQAG LDDAVDKAMQ TATEVVRKRI DELGTREPTI 181 VREGKDRILV QVPGLADPAG LKALLGKTAK LEFKLVDLTA DPAAVAANRA PPGSQIVPYP 241 GNPGGAPLIA VQRRVIISGD DLIDAQVAND QNQQSVVSIK FNSEGGRKFA RVTQENTGKP 301 FAMILDGSVL SAPNINEPIL GGNAQISGNF TVDSANQLAI ALRSGKLPVA LKVIEERTVG 361 AQLGADSIHA GVVASIIASV AVIVFMLVTY GRFGVYANLA VVLNIFIILA VMAILNATLT 421 LPGIAGFVLT IGTAVDANVL INERIREERR RGRNVVQSVE LGYKEASRTI FEANTVHAIS 481 GLIMLGLGSG PVKGFAVVLL IGICTSVFTA VLFTRMLVAL WLRKARPTEI TI //