LOCUS QJU56452.1 1089 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 peptidase S41 protein. ACCESSION CP053346-84 PROTEIN_ID QJU56452.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_00425" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012930170.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRTAGRLTSS LIALLGSAAL FAQTPSASPP PASPGKPALT QPAASPDGRT IAFASGGDIW 61 EVPSTGGIAH LLVTDAATEA RPLYSPDGKS LAFTSTRGGS TNIFLLDLAS GAVTRLTWSE 121 ASEELDSWSA DGKWLYFASS ANDPGGTPDV FRVSAAGGTP IEVSREDYLS EFQAAPSPDG 181 SIVALAARGI SFNQWWRNGH SHIDETEIWL KPLSGTGAYR KLLPGGAKQA WPMWKPGGAS 241 IVYMSDASGA ENLWEVPAAG GTPTQLTRFT SGRLLFPTMA ADGKAILFER DMAVWRYDPA 301 TGQTAEVPIT LRGAPATEGQ RHLNLATFTR LAVSPDGQKV AVIAHGEVFA APAKDGGTAQ 361 RITNSVGAER ELTWSPDSRR ILTVGERGLD RRVAEYDVAA DRETMLTGAG IATVPVYAPD 421 GKSIAYVKDA RELHLLTLAA PGKPATDRIL YTGTLATDEG DGPRPTFSPD GRWIAFPLVD 481 RRSFVNVNVV ATAGGPARPV SFLANGQMGG IAWSPDGKYL LIDSAQRTED SRLIRIDLLP 541 HVPRYREDAF RDLFKPKSPG DPAPDKGPST TPQPKPLPAA AKKKGAAAPA KPAVPPVEIV 601 WEGLRDRATI LPIGLSAELP HVSSDGKTLV FLAREKGQEN LYSYNLDELA TETPVAQQIS 661 ASDRPKADAG LTADGKTLFY LDGGRIIATP LEKPAPKVVA VTAQMDVDFA TEKQIMFDEA 721 WSVLDRNFFD PAFNGHDWKA LRAQYQPYVD GARTPDELRR VIGLMIGDLN ASHSGINRPR 781 RGPGALPQGR VGMLGLRFDR AAYEAGRGLV VSEVVPLSPA AIEGKIVPGE RLVSVDGHAI 841 GAHDNLDALL ENSVGQRVAI GVSGPNGTRT VNLKPVTLTT IDGLAYRGWV DRRRAYVDRI 901 SGGKLGYVHM ADMSADSLDQ LYLDLDADNQ AKQGVVIDVR NNNGGFVNGY ALDAISRRNY 961 LTMEPRGLYP FPARQALGQR ALGLPTILVT NQSSLSDAED FTEGYRALGL GKVVGQPTAG 1021 WIIYTWSETL IDGSTVRVPR ARIRTLSGQD MEMHPRPVDI AVERPLGETG AGTDAQLDVA 1081 VKTLLGAEK //