LOCUS       QJU56420.1              1259 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 error-prone DNA polymerase protein.
ACCESSION   CP053346-51
PROTEIN_ID  QJU56420.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_00255"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013845998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPLSPPPFVE LVAASHFSFL HGASHGSDLV ATALALKHPG LGLADRNTVA GVVRAWKALK
       61 DAREDAAALG APLAPFKLAT GARLVFADGT PDIVAYPEDR RGWGRLTRLL SDGNLRSDKG
      121 DCLLRLDDLL GYSESLLLIV LPESSRRDGE GIARKTPTIL PEDEDDSLPA QASIQPLEAG
      181 RGSRRDAETQ REKEEKEAAP GDEAHASLSA PLRLRVNTPS PRPRGNDDSK HGNVVPFPSR
      241 LREEIEGRTA PAEGRKTANV GSPPPAPPAS GSGALRRTLE TLRAACPDRV WLALPATASG
      301 TDVRRRARLL ALAREAGVPP LATTDALYAT REERPLQDVL TCIRLGVTIA QAGRRLEANA
      361 ERHLKSAAEM AHLYRDCPQA IAETTRLLAR IAFDLAQLKY EYPHEPVPEG WKPQKWLQHL
      421 VVTAARTLWG AGKTPPKALR MLREEFRLIR KMGYAYYFLT VHDVVQFARE QDPPILCQGR
      481 GSAANSMVCY LLGVTPIDPA ANNLLFSRFL SEERSEPPDI DVDFEHERRE EVMQYIYRRY
      541 GRHRAGIVAT VIHYRSRSAV REVGKALGLT DDVTSRLVST VWGSYSSRME EERFHETGFR
      601 LDNPEIARLN HFVGRLLEAP FPRHLSQHVG GFVLTEDRLD ETVPIHHAAM EDRTFVEWDK
      661 DDIDALGLMK VDILALGMLT CIRKAFDLIR DHDGTDHSLR DIPREQPDVY AMLQKGDSIG
      721 LFQVESRAQM NMLPRLKPKE LYDLVIQVAI VRPGPIQGNM VHPYLRRRQG IEKWSFPAPS
      781 PPHPADELHD ILGKTLGVPL FQEQAMKLAI VAAEFSPVDA NKFRRAMATF RNVGTMPEFE
      841 EKMVGGMTKR GYTEEFAQRC FSQIKGFGSY GFPESHAQSF AILVYASAYL KRRHPAAFCA
      901 ALLNSQPMGF YAPAQIVRDA REHGVEVCPI DVTASGWDNR LEVGAKGPAV RLGFRQIDGF
      961 KEEWAKAVEE ALFLPIADGE GDHLRQQMVE GKSPAPGYCP STAFGGPSPP APRGEDVVER
     1021 LARLIPARAL RLLADADAFR SLELGRRDAL WEVRRTPHDA LPLFAAAKAR ELAEETDAQL
     1081 PAMPLSEEVA ADYQMTRLSL KQHPMAFLRG LFRDEGILSA AELAALPDGR AARMAGVVLV
     1141 RQRPGEGKAI FVTLEDETGV TNVLLWAADF EKQRAAVMAS RLMEVRGVVQ KSEEGVVHLM
     1201 TTQVVDRTAE LDRLSADHQT RPLLSRADEF AHPQHPRKKG AERRHPRNVR VLPPSRDFH
//