LOCUS QJU56401.1 666 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 S9 family peptidase protein. ACCESSION CP053346-28 PROTEIN_ID QJU56401.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_00140" /inference="COORDINATES: protein motif:HMM:NF012546.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MQRFLVFGGA AALLWVAVSA QAELPPLQDT ARKFGAREHI LDASLSPDGA HVVYIIPGKG 61 KGTIALVTGA DGKDPKLAAM AAGDPLNLRW CNWSAADRIV CIYYGITDWA KVPASHTRTV 121 SFDLDGKNVQ YLGRRPTHDE LRVSQYDGEV IDWLSGGDGK ILMARDYVPQ DVSQSGSAGG 181 TSADGIGVDL IDTRTGISKT VEPPVRGRAD YISDGRGVVR IMSTDRARGA QSILSGTTIN 241 SYRLANERAW RPFSTVESGS SGALRPLAVD GEANVAYALK TLDGRDALYR VALDGSMKAD 301 LAYANPVVDV RGTIMVGRSG RVIGASYITD SRQVEYFDPA YRKLQSALAR AIPNLPVIRF 361 ISASADEQKL LIWAGSDVDP GQYLYFDKAT RHLDRLTAAR PELEGTKLSA QKSISYPASD 421 GKMVPAYLTL PPGSDGKHLP TIVMPHGGPA SRDDGGFDWL AQFFAQRGFA VLQPEFRGSA 481 GYGDAWFVDN GFKSWKAAIG DIADGAHWLV KEGVADPGQM AIVGWSYGGY AALQSAAVDP 541 ALFKAVVAIA PIADLGQFKA EHAAYTNGAV VARYVGDGAH IADGSPARHA DRFQAPVLMF 601 HGDQDINVDV AQSRTMDRAL RAAGKRSELV IETGLDHQIE DGDVRAGLLM KTDTFLRANL 661 KMPPAD //