LOCUS       QJU56401.1               666 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 S9 family peptidase protein.
ACCESSION   CP053346-28
PROTEIN_ID  QJU56401.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_00140"
                     /inference="COORDINATES: protein motif:HMM:NF012546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQRFLVFGGA AALLWVAVSA QAELPPLQDT ARKFGAREHI LDASLSPDGA HVVYIIPGKG
       61 KGTIALVTGA DGKDPKLAAM AAGDPLNLRW CNWSAADRIV CIYYGITDWA KVPASHTRTV
      121 SFDLDGKNVQ YLGRRPTHDE LRVSQYDGEV IDWLSGGDGK ILMARDYVPQ DVSQSGSAGG
      181 TSADGIGVDL IDTRTGISKT VEPPVRGRAD YISDGRGVVR IMSTDRARGA QSILSGTTIN
      241 SYRLANERAW RPFSTVESGS SGALRPLAVD GEANVAYALK TLDGRDALYR VALDGSMKAD
      301 LAYANPVVDV RGTIMVGRSG RVIGASYITD SRQVEYFDPA YRKLQSALAR AIPNLPVIRF
      361 ISASADEQKL LIWAGSDVDP GQYLYFDKAT RHLDRLTAAR PELEGTKLSA QKSISYPASD
      421 GKMVPAYLTL PPGSDGKHLP TIVMPHGGPA SRDDGGFDWL AQFFAQRGFA VLQPEFRGSA
      481 GYGDAWFVDN GFKSWKAAIG DIADGAHWLV KEGVADPGQM AIVGWSYGGY AALQSAAVDP
      541 ALFKAVVAIA PIADLGQFKA EHAAYTNGAV VARYVGDGAH IADGSPARHA DRFQAPVLMF
      601 HGDQDINVDV AQSRTMDRAL RAAGKRSELV IETGLDHQIE DGDVRAGLLM KTDTFLRANL
      661 KMPPAD
//