LOCUS QEO16310.1 547 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis protein translocase subunit SecD protein.
ACCESSION CP043505-3272
PROTEIN_ID QEO16310.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/geo_loc_name="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /gene="secD"
/locus_tag="FLP10_16630"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011185929.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MVGLFAINAA GVIWGGGSWT PKLALDLEGG TEIILAPKLE DGQSASQEQL DQAVSIIRQR
61 VDASGVAESE INTEGSNVVV RIPGELDDQT RSRIEQSSKL ELRPVLLATG ATSATVAPTE
121 TPAAEEELES TPTVEPTDGS DPNWITPALQ NEFDTFDCSS IDEGDASAAP ADQPLVTCDR
181 TGSIKYLLGP VEVSGANIVD ATNGTVQTST GASTGQWAVN IVFDDEGTQD FAKVSTRLYG
241 LKGEAPRDQF AFVLDGAVLS APSMNGVITD GRPQITGSFD QDTSKALADQ LKFGALPISF
301 TVQSSDTIAP TLGTAQLQAG LIAGLIGLIL VVIYTVFQYR ALASVTIASL IIAGVITYLM
361 ITILSWREGY RLSLAGVAGL IVAIGFTADS FIIYFERVRD ELRDGRPLVG AVEAGWKRAF
421 RTVLASKGVN LLAAIVLFIL AVGSVKGFAY TLGLTTVIDV VVVILFTHPM LQLLAQTRFF
481 SSGNPWSGLD PNALGAVYRG RAEFRKPSTV PARKVASSSK EAQKRQTIAE WKAAAAVGAG
541 SDEGKES
//