LOCUS QEO15937.1 905 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis HAD-IC family P-type ATPase protein.
ACCESSION CP043505-3359
PROTEIN_ID QEO15937.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_17070"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013882889.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTQGGVRAAG VSALEAPWAA EVDDVFAALG TTRGGLDDDD ATAALARVGP NRLPTPPRAP
61 LWRRVLSHFQ DVLIYILLAS AGLKAILGDW IDFAIILAVA VINAAIGFIQ EGRAERALQG
121 ISEMLSVHAH VRRNGEWTTV DAESVVPGDV VRVRSGDRVP ADARLVEAVN LQVDESALTG
181 ESLSATKRSE PVAPGAGVGD RADMLFSGTL VSAGTGEAVV VATGAATEIG RISTLISTVD
241 ALETPLTRTL ASFGKRLALL IVVLAIVMVV IGKLVHDFSI PDLVSAAIGF AVAAVPEGLP
301 ALVTITLALG VQQMARRQAI TRKLTAVETL GSVTTICSDK TGTLTRNEMT ARSVRTRGGL
361 YDVAGIGYGP DGGLSRGGAP AALADHADLR ALVETMALCN DARTVDDAGV WRLVGEPTEG
421 ALHVLGVKAG FDPAGWTRVA VVPFESATKY MATLDRDSAD GRAVHVKGAP DRLLARSATQ
481 LAPDGTSEPL DAAFWSDEID RLGAQGLRVL AAARTTPTSG TDALVASDLD AGLEFIGLVG
541 IVDPPRPEAV EAIEACHTAG IRVKMITGDH AGTAYAIARE MGIVRDEDAR VLTGEQLETM
601 GVEELHELAP QVDVYARTSP EHKIRIVSAL QARGEVVAMT GDGVNDAPAL TQAEVGVAMG
661 IKGTDATKEA AEVVLADDNF ATIERAVEEG RRIYDNLRKS ILFLLPTNGA QSLVILVAVL
721 FGLALPLEPV QVLWVNMVTG VTLSLALANE RAELDVMARP PRDPRAPILD APALRRIALV
781 SVLIGGATLG VFYAERAAGY ELATAQTTAV TMLALGQLAY LFNCRFLDRS SLTVDVLRGN
841 RVVWWSAIAL IVLQLVFVYA PFMHTWFGSA AIGPREWGLT AAIALAVFLI VEAAKAIARR
901 SRRAG
//