LOCUS QEO15910.1 964 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis excinuclease ABC subunit UvrA protein.
ACCESSION CP043505-3328
PROTEIN_ID QEO15910.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /gene="uvrA"
/locus_tag="FLP10_16915"
/EC_number="3.1.25.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010202561.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MVPISRLDPH SRLSVRGARV HNLHNVDVEI PRDAMVVFTG LSGSGKSSLA FDTIFAEGQR
61 RYVESLSAYA RQFLGQVDRP DVDFIEGLSP AVSIDQKSTN RNPRSTVGTI TEIYDYMRLL
121 WARIGVPHCP VCGERIQRQT VQQIADRLME LETGTRFQVL APVVSKKKGE FVDLFRDLAA
181 QGYTRAVVDG DLIRLDEPPT LKKQVKHDIS VVIDRLVASD DLLGRLTDSL ETALRLTDGI
241 VQINYVDADG PDAWQTFSEK LSCPNQHPIA LTEIEPRTFS FNAPFGACPE CSGLGTRMSV
301 DDDLLLGDPA LSIGEGVILP WTSQGKSLYN YYEKLLDGLA RDLGFSLETP WESLDPSVRQ
361 AVLHGDNFEV KVRWRNRFGR EMSYTSGFEG VAPYIERQYA QAETDVQRAR WAEYLREIPC
421 PVCDGKRLKP EVLSVLVHDA SIADVCLMSL TDARAFMDRL HLTDREQAIA AQVLREIKLR
481 LDFLIRVGLA YLDLARAAGT LSGGEAQRIR LATQIGSGLT GVLYVLDEPS IGLHQRDNRR
541 LIDTLVALRD LGNTLIVVEH DEDTIRTADW IVDIGPGAGV NGGTVVHSGS YADLLKNTES
601 LTGDYLAGRR EIATPSHRRP IDPERHITVE GAEANNLKKV DVQFPLGTFT AVTGVSGSGK
661 SSLVNDILYR VLANRLNGAR KVPGKHRRVT GLDHLDKVVH VDQAPIGRTP RSNPATYTGV
721 FDRIRTLFSE TVEAKARGYL PGRFSFNVKG GRCEACSGDG TIKIEMNFLP DVYVACEVCG
781 GKRYNRETLQ VHYKGKNIAE VLEMPISEAA EFFEPISAIH RYLKTLVDVG LGYVQLGQSA
841 TTLSGGEAQR VKLATELQRR SNGRSVYVLD EPTTGLHFED VRKLLKVLGK LVDKGNTVIV
901 IEHNLDVIKS ADWIIDLGPE GGSGGGTIVA TGTPEEVALN PDSHTGYFLH EIFDAASGRA
961 EVAS
//