LOCUS QEO15868.1 885 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis alanine--tRNA ligase protein.
ACCESSION CP043505-3281
PROTEIN_ID QEO15868.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /gene="alaS"
/locus_tag="FLP10_16675"
/EC_number="6.1.1.7"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018191223.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MQTAEISRRY LDFFAQRGHT IVPSAPLVSD DPTLLFTVAG MVPFVPYLTG TVPAPFPRAA
61 DVQKCIRTND IEEVGKTARH GTFFQMLGNW SFGDYFKEGA IEYAWELLTS PESSGGLGFA
121 ERDLWVTVYE TDDEAAALWQ KIAGLPAERI QRLGKEDNYW HTGQPGPGGP CSEIYFDRGP
181 KYGRDGGPAV DDDRFTEIWN LVFMQELIAN VTSKVDFDVV GPLPKKNIDT GMGLERVAFI
241 KQGVENMYEI DQVRPVLDRA SELSGRRYGA EHEDDVRMRI IADHVRSSLM LMSDGVTPSN
301 EGRGYILRRL LRRSIRAMRL LGVDGPTFHD LFAASRDAMK VAYPEVDRGY AHIEQLALGE
361 EETFLRTLAG GTTILDVAVQ KTKAAGRGEL AGDTAFLLHD TYGFPIELTL EMADEAGLAV
421 DRAAFDSLMS DQRARAKADA KSKKKVLADL SVYGEFRAKG ETIFTGYTDL TTETSVLGIL
481 VEGAPAQRAV AGQTAEVILA ETSLYAESGG QAPDQGAIVG DGFELEVLDV QKPVAGLISH
541 TVKVVRGEVG VGTAATTVVD ADYRRGATQA HSGTHLVHAA LRQVLGPNAH QSGSFNKAGY
601 LRLDYGWNKT LSPETRSEIE EISNNAIRDN LEVVTREMPL DEARELGAMA LFGEKYGDVV
661 RVVDIGGPWS RELCAGTHVS TSAEVGMINI IGESSVGASN RRVESLVGLE AFRQFAAERA
721 LVQQLTQNLK TRPDQLVERV GDLVQGLKAA EKKIQAFEAR ALSDRVPALA ANAARVGEVL
781 LVAEHVGALG SGDDLRSLAT AVRARLGDVA SVVALTAEVG GKPLAIVATS PAARDAGANA
841 GSLAKRMAGV LGGGGGGKPD LAQGGGTDVS AVPAALEAVR GELGH
//