LOCUS QEO15120.1 1301 aa PRT BCT 10-SEP-2019 DEFINITION Agromyces intestinalis DNA-directed RNA polymerase subunit beta' protein. ACCESSION CP043505-2447 PROTEIN_ID QEO15120.1 SOURCE Agromyces intestinalis ORGANISM Agromyces intestinalis Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agromyces. REFERENCE 1 (bases 1 to 3800200) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 19306 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3800200) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 174.0x Sequencing Technology :: PacBio RSII; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/03/2019 16:08:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,466 CDSs (total) :: 3,410 Genes (coding) :: 3,349 CDSs (with protein) :: 3,349 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 61 CDSs (without protein) :: 61 Pseudo Genes (ambiguous residues) :: 0 of 61 Pseudo Genes (frameshifted) :: 7 of 61 Pseudo Genes (incomplete) :: 55 of 61 Pseudo Genes (internal stop) :: 0 of 61 Pseudo Genes (multiple problems) :: 1 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Agromyces intestinalis" /mol_type="genomic DNA" /strain="KACC 19306" /isolation_source="gut of larva" /host="Protaetia brevitarsis seulensis" /culture_collection="KACC:19306" /type_material="type strain of Agromyces intestinalis" /db_xref="taxon:2592652" /geo_loc_name="South Korea: Jeonju" /collection_date="2017" /collected_by="Soo-Jin Kim, Soon-Wo Kwon" /identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon" protein /gene="rpoC" /locus_tag="FLP10_12385" /EC_number="2.7.7.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017885339.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLDATTFDEL RIGLATAEDI RKWSYGEVKK PETINYRTLK PEKDGLFGEQ IFGPSRDWEC 61 ACGKYKRVRF KGIVCERCGV EVTKSSVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDM 121 APKDLEKVIY FAAYMVIDID EDGRHADLPG LENELRLEID TIGKQRDARI ATLMERKETE 181 LAELEADGAK ADVRKRAEAA ADKEMAGVRK SADEQIAHLE RVWEDFRTLK VGDLKPEDSV 241 FQELQDRFGM YFDAYMGAEA IKKRLESFDL AAEADDLHLQ IAEGKGQKKI RAIKRLKVVN 301 SFLQTGNSPA AMVLDVVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLRRLLDL 361 GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGTGNRALK SLSDMLKGKQ GRFRQNLLGK 421 RVDYSGRSVI VVGPQLKLHQ CGLPKQMALE LFKPFVIKRL IDLQHAQNIK AAKRMVERSR 481 PQVWDVLEEI IRERPVLLNR APTLHRLGIQ AFEPQLVEGK AIQLHPLVCA AFNADFDGDQ 541 MAVHLPLSVE AQAEARILML ASNNILKPSD GRPVTLPSQD MIIGLHHLTT QRDGANGEGR 601 AFSSIAEAIL AFDQNRPGDI KLDLGAKVKI RLDGLHFAEG DEPEGFEQGK PFLFETTLGR 661 AIFNEALPAD YPFFNKQAGK SQISQIVNDL AERYPKTEVA ATLDRIKDAG FRWATRSGVT 721 VALSDIVELP QKQEIVSKYE KQAAKVQSQF DKGLTTDLER RQELIQIWTK ATDEVAKAMQ 781 EEFANNPDNT INRMVTSGAR GNWLQVRNIA GMRGLVNNPK GEIIPRPIIS SYREGLSVAE 841 YFIATHGARK GLADTALRTA DSGYLTRRLV DVSQDVIIRE DDCGTTKGLD LPIAAVDAAT 901 GELVRDPNVE NSVFARSLAA DAVNAAGEVI AEAGSDVGDV LIDKLVAAGV ESIKVRSVLT 961 CESAVGVCAA CYGRSLATGK LVDLGEAVGI IAAQSIGEPG TQLTMRTFHT GGSASADDIT 1021 QGLPRVQELF EARTPKGASP IVEAPGRITI DETERQRKVI LTPDNGDEPI AYNVLKRSTL 1081 LVEDGQHVEL GQQIIVGTVD PKEVLRVKGV REVQKHLVDG VQEVYRSQGV PIHDKHIEVI 1141 VRQMLRKVTV VDHGDTDLLP GELVDRSRYN EINRAALTEG KRTASARQEV MGITKASLAT 1201 ESWLSAASFQ ETTRVLTEAA MQGKSDPLVG LKENVIIGKL IPAGTGLAKY RNVTVEATEE 1261 ARAERYPNRI FADDATFSEG DLSFVDFDAF TNDDFTPGNY S //