LOCUS QEO14962.1 646 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis glucan endo-1,6-beta-glucosidase protein.
ACCESSION CP043505-2262
PROTEIN_ID QEO14962.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_11440"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015621961.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRFRTKTITV ATVIALATSG ALAAGAAPAT ATDQPPEVRS WLTTVDRARL LEEQPPLQFT
61 DTPSTAPTIV IDPELGYQEM DGFGASITDS SAHVLYNLSK AERDATMRKL FHPVDGIGIS
121 LLRQPIGSSD FTATSAHYTY DDVAPGKNDY LQRKFTIAHD EAQILPLLRQ AKQLNPKLKI
181 VASPWSPPAW MKTNDSLVGG KLEPGVLNAT AYAAYLVRYV VEYKKAGVPI DFLTIQNEPQ
241 NRTPDAYPGM DMPVADQARV IRILGPLLKV ASPKTKILGY DHNWATHPND LANVPPGQDP
301 EPDYPAKLLL TKAAKWIAGT AFHCYYGDPS AQTALHERFP DRGIWFTECS GSHGADDPPA
361 KFFRDTLVWH ARTITIGVPR NWSKTTANWN LALDETGGPH LGGCGTCTGL VTTHSDGTVT
421 TNAEYYTIGH LSKFVQPGAV RIASTSFGTT GWNGQVTDVA FRNPDGSFVL VAHNENDDPR
481 AVAVSVGSKT FETTLPGGAL ATYTWAASAA FDDGLVPVSV EGATASATSS AGSDAEARFA
541 VDADASTRWS SGQAQAPGQA LTIDLGVARS FSRVAIDSGG NLGDYARGWE LSVSSDGSSW
601 TSLASGAGVG QLTNVDVAPT TARYLRIAST ASAGNWWSLA DMRLYG
//