LOCUS QEO14948.1 901 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis penicillin binding protein PBP4B protein.
ACCESSION CP043505-2246
PROTEIN_ID QEO14948.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_11360"
/inference="COORDINATES: protein motif:HMM:PF07532.9"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MEHPVKILGR VAVIMASSLT LSGLGVAPAH AAPDPTLTVH YTDSTPSPVG GVTAQLLDGT
61 APTSTEVTGD AYGETTRFAF DGDVDGPVGF RVTADSVFGD DLRYVRPEAG SAEVWVVDGD
121 PRAYGEPIAV DDADVRVQDR AAYLPVSSLE GYLDVRSQYG RNGYRFDGAA TGTIDILTMY
181 RGRDYFEIAV DTNRIGSNVT GNMLNAYTDL VFDDVDGFRD GDDYFLSLSA IERIFQVGTL
241 VHPEGVLLLE PQHVAHDQLA EADPASVGFD PAKLDEIDAY VQRQVDDGGP AVAISVTKDG
301 KLVKTGAWGE ALRYSTSTAE DGTVTPAAEL PEAEQIPAAT DTLFDLASNS KMYATNYAIQ
361 RLVSEGRLDL DRTLQSFPGW EGFTDANSDY TGKWTVGGPG GIPAVYTGKE TVTIRDILHH
421 VGGMIPDPEY PNRASAGDLW YQTDDPDDRA GIVDAISRTP LRYAPRTVFA YSDVDFMILG
481 LLVEQITGQR LDVYLDAEFY GPLGLEDTMY RPLAAGVDPD RIAATELNGN TRDGNVSFGA
541 LDDGTPVPMR EYTLRGEVHD EKAYYAMGGV AGHAGLFSTA PDMAVLTQLM LNGGVYGGHE
601 YFAKDVADEF VTPFSLNPAT VGSATVGLGW RVHSQNAAAY YYFNWGPSRS TYGHQGWTGT
661 LTVIDPLHQM TITILTNMRH SPVVSPPNGF AGANYPVADL APLSGLVYRA LVGESTDYVV
721 ESSVSAVDPI EVEVGTTADE VAAALPAEVD VTDTDGGVHR VGVTWRLGEF DGTTAGDVSI
781 AGDLARPAWL VPAEGAEPLV ASAAVTVRAA TDPGTGEPGT GEPGTGEPGT GEPGTGEPGT
841 GSQPAGSDPS GANAGDLAST GFPVAAWSTL AALILAAGGA LAVIGLRRRA RGAIAAGDRT
901 E
//