LOCUS QEO14852.1 765 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis glycoside hydrolase family 92 protein
protein.
ACCESSION CP043505-2145
PROTEIN_ID QEO14852.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_10855"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013118558.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MAASFERVDP FLGTEVTELP EPTGLAASWW WPKPQIGNTH PGATSPFGMV SACAYSGAYP
61 TGYGRYDLIT EGVPPRIHDR QLASGFTHFQ QSGTGAIRKY YNYFRVTPMI EPLDVLGRTW
121 DLVDEHAEPG WYAATLENGI RAEITVGPKS AVHRYTFPKH RNARIVVDFS MGGLTIPYGA
181 TIPLRAHLET VAPGVARGEI VVEGAPLAVH LECDTPQWRQ MLWYDRRLMP GGTRLDFDHI
241 RPTTLRSFGL MWAGPVEAGQ TVELRLGFSL RGTEQARANL TRDCGVGPAR FTQRRERTGK
301 AWKRHLQSIR VDTPDDDRQT VFSTALFHSL VKPCLAPDES PFWPSPGPFA FDLSTMWDVY
361 RTQLPLITTL FPERAVELAN ALLTICEEEG NFPIGYRMAR GSDRFSRQGS ALVHTFLADL
421 CQLGLDGIDW DWALVHMHND LRRTYGEDFL LHGVAHPVSH TLDLAFGYWC TAKVARRVGD
481 VSLAEEFEAL AARWVNAYDP GTGLLQDSTF YEGTRWNYSF RLQHDMAGRI ELAGGDEAFT
541 GLLDRFFGFG APPVRQPGIR PDASEMTAGY ALGRFEGLNN EPDMESPWAY TYAGRPDRTA
601 EVVHAIVTQM FGTGRGGLPG NDDSGGLSSW YVWASLGLFP VAGQNLFLIN APSFAESRMR
661 VAGDDVFRIE TVGFTEPRPG GPVQYVQSVR FNGEPLARPW LRGAELRHGG TLTVELGSEP
721 GEWGTTERPP SHPPAVKSPP VTHDPLASHE SSEPPISTEP DRRTP
//