LOCUS QEO14617.1 862 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis glycoside hydrolase family 3 protein
protein.
ACCESSION CP043505-1863
PROTEIN_ID QEO14617.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/geo_loc_name="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_09445"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019135897.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTSPEGDYGV TSTTTASGTD ERAAHRPDPT ALALEDAIAI ATALPLADKV RLLTGAATWT
61 LTELPQLGLR TMTVSDGPIG VRGTGEDGLP SAQMPAPSAT AATWDVRLQA ALGELMAAEA
121 RRKGVDVVLA PVVNLQRSPV GGRHFECFSE DPLLTARLAV AFIGALQERG IAGCVKHFIG
181 NETETDRTTY LSRIDERTLR EVYLAPFEAV VEAGVWTIMA AYNGLSRDGV EQTATAHGPL
241 LNGILKGEWA FDGVVISDWL ATKHTAESAE GGLDLIMPGP GGPWGAALVA AVEAGEVSES
301 VIDDKVARIV RLAERVGALS GVVGDVLPFD QAGATEDPAG DEVVALLREA AARSTVVLRN
361 ESALLPIASG ADAPKRVALI GHNAVEPFTQ GGGSAFVTAP HISDPLEALR AALPDTEVAR
421 FRGGATTVTA PLVPGDLVTT PDGEPGIRID LLAADGSTVE SLQVPDATGL WFPVADARVA
481 SARLTADVAL EGAGRHVIEV GPVGAHRVDV DGELRGESTE EVGVEVVLNS SYANPPMIES
541 TIEVEADRRV RVEADLQVID GESYGRFVRV HFRYRAPGLT VDEEIEQAVA AAADADLAVV
601 VVGTNPETES EGWDRPGLAL PGRQDELVRR VVAANPRTVV VVNAGAPVLL PWLDEVPAVL
661 WWWLPGQEAG SSLAAVLTGE IEPSGRLPWT LPASEADVPV PNGLPVDGYI DYTEGAHVGH
721 RGWDRLGRTP AREFGYGLGY GEWTHTGLTV ETGDGTSPFV TARLTVANVG SVDAREVVQA
781 YLSAPDDTDE QRPQRWLAGF ALVDVAAGGE ASVSIPIARR AFEIWDTDTQ AWTLPAGAYE
841 LRVGRSSRDL RLAAPVVIGD TK
//