LOCUS QEO14398.1 962 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis alpha-mannosidase protein.
ACCESSION CP043505-1611
PROTEIN_ID QEO14398.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_08165"
/inference="COORDINATES: protein motif:HMM:PF01074.20"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTQPTNPTAD SMPKTEEPTM PAPDELVIVP HTHWDREWYE PHDVFRLRLV HMLDRLLTTL
61 EQNPDFRFTL DGQAAAVDDY LEIRPEQRER VAAAVERGQL AIGPFLILLD EFLCDGETIV
121 RNLELGLKSS RRIGPEMRVG YLPDMFGHAA QMPQLLRGFG IRHAALWRGV PARVDRHAFA
181 WRSPDGSVVR TEYLLDGYGN ALDLFALPGQ LEQLVAEYGR SIASWYGADP ILGMLGTDHS
241 APPADLMDVV GAATEAGIAT RLSVDTIEGY VRRVASEWDA GDDTALDGWP AVDGELRSHA
301 RGNLLPGVFS IRTNLKRAMA DAERRLLVAE RLDAAFGADD HRAFFDTAWY RLVESTAHDS
361 VTGCGVDATA DEVENRLVTA AHVARGVVLR TMERLAAAVP PERFVVANPA GFARRAHVEV
421 RLDDPARREL GSGVQLLDGF PEVLGDEVMR TSDLRRLLAR IHGRELFGQL INDWRFTDEG
481 LRFDVAEAPV GEFDLAAFVV ELERRIASDP DDARTWRVEI IAAPRRRAIV GVDVGGLAAV
541 EVDPATATSL GHTGGDVVRV GADGRTLANA SLAVVVGETG SVRIETAGGA GGERTVLEDA
601 LRLVDEGDRG DSYNYGPMAA GTVVDTPDAV EITVLESGPI RGRVLVRRRY TLPASIDAID
661 PDRRVAAQVP LDVDTVLELR EGEPMLRVTV EFTNLAADHR MRLLVPTGAS ELPTSAAAGQ
721 YAVTERGRSG EGGWGEFPLP TFPAARFAAA GAATLLVTKH SEYELVADEA SGQDALALTL
781 VRSVGLMSVN IHPLRDEPAG AQFPVPGAQY LGARVRTEFA VLPSPDGWAA ADAPRWAELL
841 RSEPEVARGT RGGPAVVGGV AGAGGAADAA GLPDVSVLEV GGSVVLESFR RVEAADGTGA
901 LEARFVNYGT SPARLAAVAS GTWDRTDLTG RVIERDVDLA GFMMGPARIE TFRSRGSAPD
961 RG
//