LOCUS QEO13658.1 894 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis PASTA domain-containing protein protein.
ACCESSION CP043505-768
PROTEIN_ID QEO13658.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /locus_tag="FLP10_03895"
/inference="COORDINATES: protein
motif:HMM:PF00912.20,HMM:PF03793.17"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSAQNRSTSG VAIGVLGLVG MSALAGVLVT AAVTPALAVT GMAANNGISM FENLPGYLEI
61 GELSEKTDIY ATAPDGSPFK LASFYEDNRE EVGWDQISQY VKDAAVAGED PRFYEHGGID
121 IQGTVRAALN EYVIGGATQG GSSITQQYVK NVLVNNAVRK AKTEEEKEAA VDAAIETTPE
181 RKLKEMKYAI SLEKKTSKDE ILRGYLNIAL FGGRVYGIQT AAQYYYTKNA ADLTLPEAAS
241 LIAIVNNPEK FRLDNPESET NGANTIDEET GEVVPYAATK QRRDYILDEM LKYGKITQAE
301 HDEAIATPIA PVINPPSTGC QTAGGSAYFC DYVKNVILNY YDDPTTPDVD EGAEMLKQEG
361 LQVYTTIDLE LQSRAEQAIN ENVPYVDERF DVGAVATTVQ PGTGRILAMA QNKLYSQEQE
421 VLDADPGHSA INLSTDFAYG GSSGFQPGST FKVFTLGEWL NEGHSLRESF NGNRRTFTSF
481 PGMCDGSTWT GAFNPLNDDA TIASNAVDAT KYSVNSSFMA MAQQLQLCKI KDTAQAFGVK
541 RADGLELGQR FAYEDDGTPA KNPDGTRALD PNAQFQPSAV LGTEEVAPVT MAAAFAGIAN
601 NGYTCTPIAI DRIETKDGVE ITPPASNCQQ SVTPEVAHAM EYAMAQTFNG GTASASNTGT
661 GVPHIGKTGT TDNAFDTWMV GSSTTAATAV WVGNITGGDY RTNLRTVSFD SGSAATARHR
721 IWPMIMELAD NKYGGSEFPE PDPSAFRQVL IDIPQVTGLT FDAAKQALET AGFVVEDGGQ
781 QDSNLPAGQV SGTDPSGQAG RGTTIRVFTS NGQGTTVPDL TGLTAQNAKA ALDQAGLKMR
841 GNGKPDQVVV SQDPPAGSGA RRGATVNVEF GDPDGDDGGD GDDNPPADGN GNNG
//