LOCUS QEO13495.1 933 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis preprotein translocase subunit SecA protein.
ACCESSION CP043505-592
PROTEIN_ID QEO13495.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /gene="secA"
/locus_tag="FLP10_03010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_020075386.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MASILEKVLR VGEGRTLKRL ENYAKAINAL EDDFISLTDD ELKHETVELR ERYANGESLD
61 DLLPEAFAAV REASRRTLGL RHFDVQLMGG AALHLGNIAE MKTGEGKTLV ATTAAYLNAL
121 TSRGVHVITV NDFLASYQSE LMGRVFRALG MTTGCIVAGQ TPAQRREQYA ADITYGTNNE
181 FGFDYLRDNM AWQASDMVQR GHYFAIVDEV DSILIDEART PLIISGPASG EANRWFTEFA
241 RLAERLTPGE DYEVDEKKRT VGVLEPGIEK VEDYLGIDNL YESANTPLIS FLNNSIKAKA
301 LFKRDKDYVV MNGEVLIVDE HTGRILVGRR YNEGIHQAIE AKEGVQVKAE NQTLATVTLQ
361 NYFRLYEKLS GMTGTAETEA AEFMSTYKLG VVPIPTNKPM VRIDQPDLVY KNEESKFAQV
421 VEDIVERHKN GQPVLVGTTS VEKSEYLSRL LAKKGVRHEV LNAKNHAREA AIVAQAGRLG
481 AVTVATNMAG RGTDIMLGGN AEFIAVQKMH EKGLSPAETP DEYEAEWEAV FDAVKAEVDV
541 EAQKVLAAGG LYVLGTERHE SRRIDNQLRG RSGRQGDPGE SRFYLSLTDD LMRLFNAGAA
601 ESLMARGVPD DVAIESKVVT RAIRSAQSQV EARNAEIRKN VLKYDDVLNR QREAIYSDRR
661 HILEGDDLHE RTQRFLEDVI DEVLDQHTAE GNPDEWDFDA LWTELKTLYP IDITIDEVVA
721 EAGEKGRVNR DFIRREILSD ARHAYQRREE QLGSPAMREL ERRVVLSVID RRWRDHLYEM
781 DYLKDGIGLR AMAQRDPLVE YQREGFAMFQ QMMGAIREET VGFLFNLEVE VAQQGAAPTI
841 QAKGLSRQQA PDEKLSYSAP SDSGGVEVRN QRGQVQQAAT QRARRAVAAQ QAPQQPPQPP
901 TRGAFGQPTS GDAAGGQEPQ NRAQRRAQER RGN
//