LOCUS QEO13393.1 939 aa PRT BCT 10-SEP-2019
DEFINITION Agromyces intestinalis translation initiation factor IF-2 protein.
ACCESSION CP043505-471
PROTEIN_ID QEO13393.1
SOURCE Agromyces intestinalis
ORGANISM Agromyces intestinalis
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
Agromyces.
REFERENCE 1 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 19306
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3800200)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2019) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 174.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/03/2019 16:08:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,466
CDSs (total) :: 3,410
Genes (coding) :: 3,349
CDSs (with protein) :: 3,349
Genes (RNA) :: 56
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 47
ncRNAs :: 3
Pseudo Genes (total) :: 61
CDSs (without protein) :: 61
Pseudo Genes (ambiguous residues) :: 0 of 61
Pseudo Genes (frameshifted) :: 7 of 61
Pseudo Genes (incomplete) :: 55 of 61
Pseudo Genes (internal stop) :: 0 of 61
Pseudo Genes (multiple problems) :: 1 of 61
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Agromyces intestinalis"
/mol_type="genomic DNA"
/strain="KACC 19306"
/isolation_source="gut of larva"
/host="Protaetia brevitarsis seulensis"
/culture_collection="KACC:19306"
/type_material="type strain of Agromyces intestinalis"
/db_xref="taxon:2592652"
/country="South Korea: Jeonju"
/collection_date="2017"
/collected_by="Soo-Jin Kim, Soon-Wo Kwon"
/identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
protein /gene="infB"
/locus_tag="FLP10_02400"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018190365.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MAAKPRVHEI ASELGVDSKV ALEKLKQMGE YVKGPSSSIE PPVARRLKAA LEADGAANTA
61 AAAAAPAAAP KASAKPGPKP GPKPPAAPAA EAAPAAPVAD APMSVAERQA QAEKALAEKA
121 AEKAAEQAAE RSTETTAPTD VPTAPAAASP KPNAPRPAAG PKPGAPRPGN NPFSSSQGMG
181 QRPAAPRPGN NPFSSSQGMG QRPSPGNIPR PQAPRPGSPR PGAPRPGGAG RPGGAGRPGG
241 FQRPGGAGAG AGRPGGFGGP RPGGAGGVGG APRPGGGFGG PRPAGGGGRG RGPGGGTAGA
301 FGRGGGKSKA RKSKRTKRQE FEMREAPSLG GVSVPRGDGG TVIRLRRGAS ISDFADKIDA
361 NPGSLVTVLF HLGEMATATE SLDEATFQVL GEELGYKIQI VSPEDEDREL LEGFDIDLDQ
421 ELEDETDEDL EQRPPVVTVM GHVDHGKTRL LDAIRNANVV AGEAGGITQH IGAYQVHTEH
481 EGIERAITFI DTPGHEAFTA MRARGAQVTD IAILVVAADD GIMPQTIEAL NHAQSANVPI
541 VVAVNKIDKP DANPAKVRQQ LTEFGLVAEE YGGDVMFVDV SARENIGIQE LLDAVLLTAD
601 AGLDLRANPN KDARGVAIEA KLDKGRGSVA TVLIQSGTLK VGDAIVAGTA YGRVRAMADE
661 NGDPVTAATP SRPVQVQGLS SVPRAGDTFL VTEDDRTARQ IAEKREAAQR NAQLAKARKR
721 ISLEDFTRAL EEGKVEALNL IIKGDVSGAV EALEESLMKI EVDDSVQLRI LHRGVGAVTE
781 SDIDLATIDN AIVIGFNVRP DVKARERAAR EGVDVRFYSV IYNAIDDIEA SLKGMLKPEF
841 EEVQSGVAEI REVFRSSKFG NIAGVIVRSG TITRNAKARV IRDGVVVGDN LAIESLRRFK
901 DDVTEVRTDF EAGIGLGKYN DIQVGDEIET IEMREKPRA
//