LOCUS       QDH17043.1              1214 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis bifunctional proline dehydrogenase/
            L-glutamate gamma-semialdehyde dehydrogenase PutA protein.
ACCESSION   CP038141-1010
PROTEIN_ID  QDH17043.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="putA"
                     /locus_tag="E3D00_05300"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: protein motif:HMM:PRK11904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQQLTTPPSS SFKFSFSQAP QSELREAIAD THFRSEKVCI EDLLPYARLN SEQNKQTERF
       61 ARIILEAKQK TPLNNLEQLL KTFPLSSPEG QSFISLAETF LRIPDATTKD ALIRSQFNKT
      121 NWARHIKKQN QSLANSFALN MSLMGQLKAS KGFSLQRLTL QTSTPMIRKG LEKTLLAAAQ
      181 SFIIGNHLPA AFKTIKSYEK HNFNYIYDLQ AETALTADQA FKALTSYENA LETLGQHAGI
      241 TGSLYERPFL YVRLPALITH FGRFRRDRLI NELLPALQRL ANRSKQLDIG LIFSVENSQH
      301 LESTLDLFES LCSTPELQNW NGLGITLNAY DKRAHKTIDF LTDLADRTAR KIIVRLTHGS
      361 SWNSEIRQAQ QSGLIDFPIF THRCHTDISY LACAQKLITS PHLYTQFATE NPRIIGHILT
      421 VAGKPSPEKY EFSFPYAAGL AWPQKFKDLF QSSCRIHAPI GAAQAWLPRF VRQTLEANIL
      481 SPFTQEEDHN PNVTTIETLT ENPIAAADAI PEEENVTPSV VLPSDLFMPA YKNSIGLDFT
      541 TEHALRNFED SLQALPSFFH ATSLTYRQKN SSNSSRIIYN PADHQEPLGE VIEADGAVLL
      601 HAIKSAEEAL PEWGQTTPAL RGEMLKKAAD LFEEHSNEFI ALLIKEAGKT ILSAQQEVRQ
      661 AVNFLRYNAS SLNNQPFHKN MYPLGLIACI SPWSSPLAAF IHQISISLAA GNIVIAKPAE
      721 QVPFSAYKAI QLLYAAGVPE NVLYLLLGNE TVGERLVSDP RIDAVMFTGS TQTGKTISRH
      781 TFNRQGRTGS PTIFVARTGG QNALLVDSST HPEQAVQDIL KSAFTNAGQH CSSLRILLIQ
      841 EECADQIITL LKKAIQDLII GDPSRLQTDI GPIISNEART EIIDHLDMMR RAGRSVWSPE
      901 LDENCRYGCF LPPTLIEIGR VADIPNEVFG PVLHIRRFSR QEFDGVIDAV NSMGFALSFG
      961 IHSRIPSTIE RAINRIEADN IYINRNMIDT LPHAQPFGGH GMSGCGAKAG GPFALRRMIA
     1021 GPPPLPWIKL EHVTQGNVSR AAQNLVTFLE SRDAVSARQI RQDIAHTLLN WKMALPSPSG
     1081 ETNTLTLIPA GPILCAGNNW PQILRAVGLA LGTGNNVQVL GPDHALEWIR LLPKSLTDRI
     1141 ERIYPGALPE CSIMIMERNS QYALEAAATL TAREGKIVPI HMLDALRPEW LLNERVITTN
     1201 TASLCGDPVA MSLS
//