LOCUS       QDH16485.1              1439 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis DNA-directed RNA polymerase subunit
            beta' protein.
ACCESSION   CP038141-382
PROTEIN_ID  QDH16485.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="rpoC"
                     /locus_tag="E3D00_02030"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008852413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNELMKILGQ SGQSVTFDQI KIQLASSEQI RSWSYGEIKK PETINYRTFK PERDGLFCAR
       61 IFGPIKDYEC LCGKYKRMKF RGIVCEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
      121 PSRIATMLDL PLKDVEPVLY FERFLVLDKG VADTDQIDSY KHGKKRDQYL LDEIRCEDLL
      181 DEYPDAGIEV GIGAEAIKRA LSSYNWGIPN AEERELSLAA KAKGLPDPFD YDAEVMEEDS
      241 EKTMMRKKLR KATSEAARKK LVKRLKLVES FVESGSNPDW MIMDIVPVIP PELRPLVPLD
      301 GGRFATSDLN DLYRRVINRN NRLKRLMELR APDIIVRNEK RMLQEAVDAL FDNGRRGRAI
      361 TGANKRPLKS LSDMLKGKQG RFRQNLLGKR VDYSGRSVIV VGPELKLHQC GLPKKMALEL
      421 FKPFIYSKLE KYGHATTIKA AKRMVEKERP EVWDILEEVI REHPVMLNRA PTLHRLGIQA
      481 FEPTLIEGKA IQLHPLVCTA FNADFDGDQM AVHVPLSLEA QLEARVLMMS TNNILSPANG
      541 KPIIVPSQDI VLGLYYLSLE VPEYRETPDE AEIVDGKVVK AGPPAYGDVS EIESAMLSGS
      601 LKLHDKIRLR LTTVNADGKS VRETLVTTPG RALIARILPK HSDISFALIN KQLTKKNVSD
      661 VIDTVYRHCG QKEAVIFCDR LMELGFRHAA RAGISFGKDD MIIPEAKKTL VAKTSEEVKE
      721 FEQQYQDGLI TAGERYNKVV DAWSRCTDEV QAAMLKEISK QVIGKPTNSV WMMSHSGARG
      781 SPAQMKQLAG MRGLMVKPSG EIIEQPIIAN FKEGLSVLDY FTSSHGARKG LADTALKTAN
      841 SGYLTRRLVD VAQDCIIVEQ DCGTERGLTV RAVMDSGEVV SSLSERILGR TLSKDVLHPV
      901 TEELLVARNT LVDEALSDVI EQAGVESVEI RSVLTCDSRV GICAHCYGRD LARGTPVNIG
      961 EAVGVIAAQS IGEPGTQLTM RTFHIGGAAT RGAEQSMVEA ARDGVVKIKN RNVVENSQKV
     1021 PVVMSRNCEI LLVDENGVER SRYRVPYGAR LMVGEGEEVT RGQKMAEWDP YTLPIITERA
     1081 GKVEYLDLID SITLVERMDE VTGLSSKVVV DYKQAAKGVD LRPRLQLKDA SGNVVKLANG
     1141 NDARYFLSPD SILSVENGAE VNAGDVLARI PREGSKTRDI TGGLPRVAEL FEARRPKDHA
     1201 IIAEGDGRIE FGKDYKSKRC IIVKNDETDE ETQYLIPKGK HISVQEGDFV QKGDPLVDGP
     1261 RVPHDILKVM GVEALSDYLV NEIQDVYRLQ GVKINDKHIE VIVRQMLQKV EVLEPGDSTY
     1321 LIGETVDRIE FEIENQRLME NGDTPARGMP VLQGITKASL QTQSFISAAS FQETTRVLTD
     1381 AATSGKVDTL NGLKENVIVG RLIPAGTGSV INRLRTIAAS QDRARVSGIP SKKIEDAAE
//