LOCUS       QDH16324.1               870 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis type VI secretion system ATPase TssH protein.
ACCESSION   CP038141-207
PROTEIN_ID  QDH16324.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="tssH"
                     /locus_tag="E3D00_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAAVIDLQRL VGHLDDACRA ALEAAAGAAL SRTHYTVEVE HWLAQILQNE KSDVSQFLAH
       61 EEINSAQVAA GLNTVLDRFS TGNGRSPALS PELVGILKDG WLIATVDRSD RVLRSGHVFC
      121 AALADEVVAS RLRAAIPALR KLASEVLIRD FDHLAQGSVE GVTSLQSGEE GEIAPPVNKG
      181 ALDRFTTDLV ELARSGKIDP ILGRDQEIRQ VIDILTRRRQ NNPILTGEAG VGKTAVVEGL
      241 ALRIAQGDVP EALEQVAIRT LDLGLLQAGA GVKGEFENRL RSVIDEVKNS PTPIVLFIDE
      301 AHTLIGAGGQ AGQGDAANLL KPPLARGELR MIAATTWAEY KRYFEKDAAL TRRFQTVKVE
      361 EPNEAVAIDM LRGLVAVLEK HHGVRILDEA TEAAVRLSSR FIPDRQLPDK GVSLLDTACA
      421 RVAMSQGSTP GDIENRRRRV AAIEREIELL EREALSGASH ETRVAKLRAE AEEISERLQE
      481 DEARLAQEKD VVHALMELRL EAEKEGADSA EAREKAIALS DELKNLQGES PMIHPVVDAQ
      541 VVAEIVENWT GVPARRMRSD EVERLLRLED DLRARVVGQD HALKAVSEAI RVSRAGLTDP
      601 RKPVGVFLMA GTSGVGKTET ATALAELLYG GAQSLTTINM TEFKEEHKVS LLMGSPPGYV
      661 GYGEGGVMTE AVRRRPHSVL LLDEFEKAHP GVQDIFFQAF DKGAMKDGEG RDIDFRNTII
      721 IMTTNAGTQL IDALFADPET APDAETLATA LNEEMLKHFK AAFLGRVTLV PYLPLSEETR
      781 RMIVQLQVAK VIKRVASVYG VTLTFDETAI EALQARSASS ASGARIIERT IAVEILPLLA
      841 RSFLGRRSDE PSVDIRLIYE NGFKLEQAGA
//