LOCUS       QDH16198.1              1140 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis DNA polymerase III subunit alpha protein.
ACCESSION   CP038141-76
PROTEIN_ID  QDH16198.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /country="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="dnaE"
                     /locus_tag="E3D00_00390"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014104839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSHADFIHLR NHSAYSLSQG AIRIPDLVAL AAKNKMPAVA LTDSGNLFGA LEFSLLCRSG
       61 GIQPIVGCQL ALPARNTKPG APSEPLVVLA RNEVGLANLQ ILSSYGFLNG DPADPTVAVD
      121 VLCQHSEGLF LLTGGNRGPI NRLIYEEQKL EAEELLKQLA KAFPGNIAVE LNRFGDSGEQ
      181 EVESILIPLA DKLDIPLVAT NECFFPKPDM HEAHDALICI AQGKTMAEAD RWHVSPQAWF
      241 KTPQEMRELF HDLPEACDNT IIIAQKCAIA ANTRKPLLPI CPKVREGATE EETLRAMAWE
      301 GLEKRLETIG ADDEKRTLYS ERLKTELDII VGMGFPGYFL IVADFIQWAK AHDIPVGPGR
      361 GSGAGSLVAY ALTITDIDPI PFGLLFERFL NPERVSMPDF DIDFCQDRRD EVIRYVRQEY
      421 GGNRVAQIIT FGKLQAKAAV RDVGRVLGLP YGMVNRVAEL IPNNPAKPVS LGQAIEGETR
      481 LQEMRDSDES IRRLLEIALQ LEGLYRHAST HAAGVVIGDR ELVELVPLYR DPKSDMLVTQ
      541 YNMKFVEQAG LVKFDFLGLT TLTILKRGLD FLKEQGIEVD ISMIPLDDKR TFDMLARGDT
      601 AGVFQFEGAG MRDMLKQMAA SRLEDLIAGV SLYRPGPMAN IPDYCRRKHG EPWEPPHEEI
      661 REILEETYGI MVYQEQVMQI AQKMAGYSLG GADLLRRAMG KKIASEMEKQ RAIFTEGAIN
      721 RGIPEQKAIE VFDLMARFAD YGFNKSHAAA YALVSYQTAW MKANYPVAFL AGCMSLAREK
      781 TDKLAALCQE ARRMKIPLLP VDINRSMTDF SIEQLEDGQQ GIRYALSAIK RVGAAAMDRI
      841 VAARGDRPFV DLTDFAERCD PKSLNKIQIE SLAKAGAFDS VLKERHVVFA SADIILRRAQ
      901 ARAQEQNMGQ TGLFGGTGQE REILRLNEGK PWPDFERLSL EASAIGFHMS AHPLDGYRPV
      961 LRRLGVTPSN ALENVAKLGT TRVKIAGCVV DKKERPTKTG KKMAWVTLSD SGGSCEVTLF
     1021 SETLLMCRDL LVTGQALLVT AELKLDGDAL RITAQSVTDL ESAAAAERSE IRVWLNEERA
     1081 LHDLTAMLGE VRGGHGKVIL VPVLEEMRNV EVVLPGRYRA TPRLAEQIRT VRGVEKAEQW
//