LOCUS       QDH16177.1              1162 aa    PRT              BCT 02-JUL-2019
DEFINITION  Swingsia samuiensis transcription-repair coupling factor protein.
ACCESSION   CP038141-54
PROTEIN_ID  QDH16177.1
SOURCE      Swingsia samuiensis
  ORGANISM  Swingsia samuiensis
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Swingsia.
REFERENCE   1  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     The complete genome sequence of Swingsia samuiensis NBRC107927(T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2163214)
  AUTHORS   Chua,K.-O., Chan,K.-G. and See-Too,W.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2019) Institute of Biological Sciences,
            University of Malaya, University of Malaya, Kuala Lumpur, Kuala
            Lumpur 50603, Malaysia
COMMENT     Bacteria and source DNA available from NBRC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAR-2019
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: Swingsia_samuiensis
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 625.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2019 13:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,019
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 16 of 32
            Pseudo Genes (incomplete)         :: 17 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 8 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Swingsia samuiensis"
                     /mol_type="genomic DNA"
                     /strain="AH83"
                     /isolation_source="Plant"
                     /host="Allamanda cathartica"
                     /type_material="type strain of Swingsia samuiensis"
                     /db_xref="taxon:1293412"
                     /geo_loc_name="Thailand: Samui Island"
                     /collection_date="14-Mar-2007"
     protein         /gene="mfd"
                     /locus_tag="E3D00_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAQSEAVTSE VTTTSFGPTI WGVPDGSVAF LLRQRLAEHE GPLLHVARDD AAVAALADML
       61 AYLMPEVEVL RLPAWDCLPY DRVSPNPALV AERVGTLCRL LEPTKARRIV LTTIHSLIQR
      121 VPPRSSFKGQ SLSVASGETL DQSMLIELLI DNGYTRTDTV MEPGEFATRG GIFDLFPSGA
      181 SDPVRLDLFG DEVENIRSFD VGTQRSTEKL ARFDLRPVSE YSLNAASISR FRTGWRDTFG
      241 SAATEDLIYE NVSHGRRYPG LEHYLPLFHD GDGEQMETLL DYMPGVAMSF DQHAPDILKA
      301 RLEMIKDHYE ARRVPVREGE MPYRALPPHR LYLDQHGWDS MLAKVPSVVL NTFAKPDIGD
      361 GIDAGNRPGQ LFARARDGSR EGIFEAFGKQ AEEWAKSGRR TYVTAWSRGS RERIAHLLKE
      421 HGVAAESYDS WPKAASVSRG TVGLLVLGLE RGFITDRLSF VSEQDLLGER ISRPPRRKKR
      481 GEQFISQIGE IAEGDLVVHQ EYGIGRYNGL ETITEGRVAH DYLSIMYDDA QRLLLPVENI
      541 DLLSRFGSEQ TGVQLDKLGG TAWQARKAKM KSRIRIMAGE LIRTAAARAL KEAPTLAPAE
      601 GAWDEFCARF PFVETEDQTR AIADVLEDMS AGRPMDRLVC GDVGFGKTEV ALRAAFVAAM
      661 SGMQVAVVVP TTLLARQHYR SFSTRFEGLP VKIAQLSRLV TAKEASKVRE ELSEGKLDIV
      721 VGTHALLAKT VSFNRLGLLI IDEEQHFGVG HKEKLKSLRE DVHVLTLSAT PLPRTLQLSL
      781 SGVREMSLIA TPPTDRLAVR TFITPFDSVM IREAIQRERF RGGQIFCVVA RLADMERMSE
      841 RLIDIVPDAK IAQAHGRLTP TELERVMTEF ADGKYDILLS TNIVESGLDM PSVNTIIIHR
      901 ADMFGLGQLY QLRGRVGRGK QRGYAYLTWP QTKPLSASSQ KRLEVMQTLD SLGAGFTLAS
      961 HDLDLRGAGN LLGDEQSGHI KEVGIELYQQ MLEDAVAGLR QERGRKEEDD KDWTPHIILG
     1021 LPVLIPEKYV PDLPVRLGLY RRIASLNGEQ EVEAMRAELV DRFGSLPPEV ANLLDVVLIK
     1081 KMCREAGVER LEAGPKGMVI QFRKNRFKNP AGLLDWATRK QDSGVKIRPD HKLALIREMT
     1141 NATRINFAKK VTNVLCKLAR KV
//