LOCUS QDH16177.1 1162 aa PRT BCT 02-JUL-2019 DEFINITION Swingsia samuiensis transcription-repair coupling factor protein. ACCESSION CP038141-54 PROTEIN_ID QDH16177.1 SOURCE Swingsia samuiensis ORGANISM Swingsia samuiensis Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Swingsia. REFERENCE 1 (bases 1 to 2163214) AUTHORS Chua,K.-O., Chan,K.-G. and See-Too,W.-S. TITLE The complete genome sequence of Swingsia samuiensis NBRC107927(T) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2163214) AUTHORS Chua,K.-O., Chan,K.-G. and See-Too,W.-S. TITLE Direct Submission JOURNAL Submitted (20-MAR-2019) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur, Kuala Lumpur 50603, Malaysia COMMENT Bacteria and source DNA available from NBRC. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 19-MAR-2019 Assembly Method :: HGAP v. 4 Assembly Name :: Swingsia_samuiensis Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 625.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/21/2019 13:37:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,097 CDSs (total) :: 2,019 Genes (coding) :: 1,987 CDSs (with protein) :: 1,987 Genes (RNA) :: 78 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 16 of 32 Pseudo Genes (incomplete) :: 17 of 32 Pseudo Genes (internal stop) :: 8 of 32 Pseudo Genes (multiple problems) :: 8 of 32 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Swingsia samuiensis" /mol_type="genomic DNA" /strain="AH83" /isolation_source="Plant" /host="Allamanda cathartica" /type_material="type strain of Swingsia samuiensis" /db_xref="taxon:1293412" /geo_loc_name="Thailand: Samui Island" /collection_date="14-Mar-2007" protein /gene="mfd" /locus_tag="E3D00_00280" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008851457.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAQSEAVTSE VTTTSFGPTI WGVPDGSVAF LLRQRLAEHE GPLLHVARDD AAVAALADML 61 AYLMPEVEVL RLPAWDCLPY DRVSPNPALV AERVGTLCRL LEPTKARRIV LTTIHSLIQR 121 VPPRSSFKGQ SLSVASGETL DQSMLIELLI DNGYTRTDTV MEPGEFATRG GIFDLFPSGA 181 SDPVRLDLFG DEVENIRSFD VGTQRSTEKL ARFDLRPVSE YSLNAASISR FRTGWRDTFG 241 SAATEDLIYE NVSHGRRYPG LEHYLPLFHD GDGEQMETLL DYMPGVAMSF DQHAPDILKA 301 RLEMIKDHYE ARRVPVREGE MPYRALPPHR LYLDQHGWDS MLAKVPSVVL NTFAKPDIGD 361 GIDAGNRPGQ LFARARDGSR EGIFEAFGKQ AEEWAKSGRR TYVTAWSRGS RERIAHLLKE 421 HGVAAESYDS WPKAASVSRG TVGLLVLGLE RGFITDRLSF VSEQDLLGER ISRPPRRKKR 481 GEQFISQIGE IAEGDLVVHQ EYGIGRYNGL ETITEGRVAH DYLSIMYDDA QRLLLPVENI 541 DLLSRFGSEQ TGVQLDKLGG TAWQARKAKM KSRIRIMAGE LIRTAAARAL KEAPTLAPAE 601 GAWDEFCARF PFVETEDQTR AIADVLEDMS AGRPMDRLVC GDVGFGKTEV ALRAAFVAAM 661 SGMQVAVVVP TTLLARQHYR SFSTRFEGLP VKIAQLSRLV TAKEASKVRE ELSEGKLDIV 721 VGTHALLAKT VSFNRLGLLI IDEEQHFGVG HKEKLKSLRE DVHVLTLSAT PLPRTLQLSL 781 SGVREMSLIA TPPTDRLAVR TFITPFDSVM IREAIQRERF RGGQIFCVVA RLADMERMSE 841 RLIDIVPDAK IAQAHGRLTP TELERVMTEF ADGKYDILLS TNIVESGLDM PSVNTIIIHR 901 ADMFGLGQLY QLRGRVGRGK QRGYAYLTWP QTKPLSASSQ KRLEVMQTLD SLGAGFTLAS 961 HDLDLRGAGN LLGDEQSGHI KEVGIELYQQ MLEDAVAGLR QERGRKEEDD KDWTPHIILG 1021 LPVLIPEKYV PDLPVRLGLY RRIASLNGEQ EVEAMRAELV DRFGSLPPEV ANLLDVVLIK 1081 KMCREAGVER LEAGPKGMVI QFRKNRFKNP AGLLDWATRK QDSGVKIRPD HKLALIREMT 1141 NATRINFAKK VTNVLCKLAR KV //