LOCUS       QAY60227.1              1291 aa    PRT              BCT 03-FEB-2019
DEFINITION  Microbacterium protaetiae DNA-directed RNA polymerase
            subunit beta' protein.
ACCESSION   CP035494-1911
PROTEIN_ID  QAY60227.1
SOURCE      Microbacterium protaetiae
  ORGANISM  Microbacterium protaetiae
            Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae;
            Microbacterium.
REFERENCE   1  (bases 1 to 3790483)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain DFW100M-13
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3790483)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2019) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            Korea, Republic of
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2019
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 273.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/28/2019 13:01:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,540
            CDSs (total)                      :: 3,486
            Genes (coding)                    :: 3,406
            CDSs (with protein)               :: 3,406
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 26 of 80
            Pseudo Genes (incomplete)         :: 57 of 80
            Pseudo Genes (internal stop)      :: 7 of 80
            Pseudo Genes (multiple problems)  :: 10 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Microbacterium protaetiae"
                     /mol_type="genomic DNA"
                     /strain="DFW100M-13"
                     /host="Protaetia brevitarsis seulensis larva"
                     /culture_collection="KACC:19323"
                     /type_material="type strain of Microbacterium protaetiae"
                     /db_xref="taxon:2509458"
                     /country="South Korea: Wanju-gun"
                     /collection_date="2016"
                     /collected_by="Soo-Jin Kim"
                     /identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon"
     protein         /gene="rpoC"
                     /locus_tag="ET475_09655"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013584065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLDATTFDEL RIGLATADDI RRWSYGEVKK PETINYRTLK PEKDGLFGEQ IFGPSRDWEC
       61 ACGKYKRVRF KGIVCERCGV EVTKSSVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDM
      121 APKDLEKVIY FAAYMVISVD EEARHRDLPT HENNLRLEMK TIADRRDARV AARLQKLEED
      181 LAALEAEGAK ADQKKKTKDA AEKEMASVRK NADEQIARLE RVWEDFRTLE VGALKPEDDV
      241 FHELQDRFGQ YFEAYMGAES IQRRLQAFDL AAESESLRLQ ISEGKGQRKI RAIKRLKVVN
      301 SFLSTGMSPA SMVLDVVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLRRLIDL
      361 GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGTGNRALK SLSDMLKGKQ GRFRQNLLGK
      421 RVDYSGRSVI IVGPTLKLHQ CGLPKTMAIE LFKPFVIKRL IDLGHSQNIK AAKRAVERMR
      481 PEVWDVLEEI IRERPVLLNR APTLHRLGIQ AFEPQLVEGK AIQLHPLVCA AFNADFDGDQ
      541 MAVHLPLSVE AQAEARILML ASNNILKPSD GRPVTLPSQD MIIGLHYLTT LKEGAAGEGR
      601 VFGSVGEAIL ARDEGTLDLQ AKVRIRIPGL AFLEGESPEG YETHGLVDTS LGQAIFNDAL
      661 PKGYPFVREQ ADKGKLSQIV NKLAEEYPKV TVAAALDAIK DAGFYWATRS GVTVAMSDIL
      721 TPPSKAAIIG EHEKRAAKVQ SQYEKGLTTD AERRQELIKI WTEATDEVQK AMRDNFPAEN
      781 TINRMVSSGA RGNWLQIRNI AGMRGLVNNP KGEIIPRPII SSYREGLSVA EYFIATHGAR
      841 KGLADTALRT ADSGYLTRRL VDVSQDVIIR EDDCGTSKGL ELPIAAAGAD GTLVRDANVE
      901 NSVFSRTLAT DVVSESGEVL AEAGSDVGDV LINRLIELGV TSIKVRSVLT CDSAVGVCAQ
      961 CYGRSLATGK LVDIGEAVGI IAAQSIGEPG TQLTMRTFHT GGSASADDIT QGLPRVTELF
     1021 EARTPKGASP IAESDGRVTI DETEKTRKVI LTPDNGDEPH VYPVLKRATL LVEDGQHVTV
     1081 GQPLQVGTLD PKEIMRVQGA REVQKYLVNG VQGVYRSQGV PIHDKHIEVI VRQMLRKVTV
     1141 VDHGETTLLP GELVDSRRFI DRNRASVAEG KRPASGRPEL MGITKASLAT ESWLSAASFQ
     1201 ETTRVLTQAA MEGKSDPLVG LKENVIIGKL IPAGTGLTKY RNVVVEATEE AKSERYPNRI
     1261 FASDGAYSDA DLSYVDFDSF STDDYTPGTY N
//