LOCUS QAY60227.1 1291 aa PRT BCT 03-FEB-2019 DEFINITION Microbacterium protaetiae DNA-directed RNA polymerase subunit beta' protein. ACCESSION CP035494-1911 PROTEIN_ID QAY60227.1 SOURCE Microbacterium protaetiae ORGANISM Microbacterium protaetiae Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium. REFERENCE 1 (bases 1 to 3790483) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain DFW100M-13 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3790483) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (25-JAN-2019) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: JAN-2019 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 273.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/28/2019 13:01:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,540 CDSs (total) :: 3,486 Genes (coding) :: 3,406 CDSs (with protein) :: 3,406 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 80 CDSs (without protein) :: 80 Pseudo Genes (ambiguous residues) :: 0 of 80 Pseudo Genes (frameshifted) :: 26 of 80 Pseudo Genes (incomplete) :: 57 of 80 Pseudo Genes (internal stop) :: 7 of 80 Pseudo Genes (multiple problems) :: 10 of 80 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Microbacterium protaetiae" /mol_type="genomic DNA" /strain="DFW100M-13" /host="Protaetia brevitarsis seulensis larva" /culture_collection="KACC:19323" /type_material="type strain of Microbacterium protaetiae" /db_xref="taxon:2509458" /country="South Korea: Wanju-gun" /collection_date="2016" /collected_by="Soo-Jin Kim" /identified_by="Soo-Jin Kim, Jun Heo, Soon-Wo Kwon" protein /gene="rpoC" /locus_tag="ET475_09655" /EC_number="2.7.7.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013584065.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLDATTFDEL RIGLATADDI RRWSYGEVKK PETINYRTLK PEKDGLFGEQ IFGPSRDWEC 61 ACGKYKRVRF KGIVCERCGV EVTKSSVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDM 121 APKDLEKVIY FAAYMVISVD EEARHRDLPT HENNLRLEMK TIADRRDARV AARLQKLEED 181 LAALEAEGAK ADQKKKTKDA AEKEMASVRK NADEQIARLE RVWEDFRTLE VGALKPEDDV 241 FHELQDRFGQ YFEAYMGAES IQRRLQAFDL AAESESLRLQ ISEGKGQRKI RAIKRLKVVN 301 SFLSTGMSPA SMVLDVVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLRRLIDL 361 GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGTGNRALK SLSDMLKGKQ GRFRQNLLGK 421 RVDYSGRSVI IVGPTLKLHQ CGLPKTMAIE LFKPFVIKRL IDLGHSQNIK AAKRAVERMR 481 PEVWDVLEEI IRERPVLLNR APTLHRLGIQ AFEPQLVEGK AIQLHPLVCA AFNADFDGDQ 541 MAVHLPLSVE AQAEARILML ASNNILKPSD GRPVTLPSQD MIIGLHYLTT LKEGAAGEGR 601 VFGSVGEAIL ARDEGTLDLQ AKVRIRIPGL AFLEGESPEG YETHGLVDTS LGQAIFNDAL 661 PKGYPFVREQ ADKGKLSQIV NKLAEEYPKV TVAAALDAIK DAGFYWATRS GVTVAMSDIL 721 TPPSKAAIIG EHEKRAAKVQ SQYEKGLTTD AERRQELIKI WTEATDEVQK AMRDNFPAEN 781 TINRMVSSGA RGNWLQIRNI AGMRGLVNNP KGEIIPRPII SSYREGLSVA EYFIATHGAR 841 KGLADTALRT ADSGYLTRRL VDVSQDVIIR EDDCGTSKGL ELPIAAAGAD GTLVRDANVE 901 NSVFSRTLAT DVVSESGEVL AEAGSDVGDV LINRLIELGV TSIKVRSVLT CDSAVGVCAQ 961 CYGRSLATGK LVDIGEAVGI IAAQSIGEPG TQLTMRTFHT GGSASADDIT QGLPRVTELF 1021 EARTPKGASP IAESDGRVTI DETEKTRKVI LTPDNGDEPH VYPVLKRATL LVEDGQHVTV 1081 GQPLQVGTLD PKEIMRVQGA REVQKYLVNG VQGVYRSQGV PIHDKHIEVI VRQMLRKVTV 1141 VDHGETTLLP GELVDSRRFI DRNRASVAEG KRPASGRPEL MGITKASLAT ESWLSAASFQ 1201 ETTRVLTQAA MEGKSDPLVG LKENVIIGKL IPAGTGLTKY RNVVVEATEE AKSERYPNRI 1261 FASDGAYSDA DLSYVDFDSF STDDYTPGTY N //